PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold2964_cov920058030.1 Phenylpropanoid C4H/CYP73A medium borderline
Cretscaffold2964_cov920058030.2 Phenylpropanoid C4H/CYP73A medium borderline
Cretscaffold43322_cov1250087260.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold480_cov830093220.1 Phenylpropanoid C4H/CYP73A medium borderline
Cretscaffold72152_cov970118790.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold83267_cov900127940.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold83267_cov900127970.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold85913_cov830161730.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold85925_cov910186310.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold85995_cov800222460.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold85995_cov800222590.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold86048_cov930259800.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold86076_cov900270150.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold86078_cov820271040.1 Phenylpropanoid C4H/CYP73A medium borderline
Cretscaffold89765_cov1920285110.1 Phenylpropanoid C4H/CYP73A low borderline
Cretscaffold1027_cov900003730.1 Phenylpropanoid CAD medium borderline
Cretscaffold1027_cov900003730.2 Phenylpropanoid CAD medium borderline
Cretscaffold11262_cov1100005470.1 Phenylpropanoid CAD low borderline
Cretscaffold11262_cov1100005470.2 Phenylpropanoid CAD medium pass
Cretscaffold11439_cov810010490.1 Phenylpropanoid CAD low borderline
Cretscaffold11439_cov810010510.1 Phenylpropanoid CAD low borderline
Cretscaffold132_cov940017510.1 Phenylpropanoid CAD low borderline
Cretscaffold132_cov940017510.2 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780021210.1 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780021330.1 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780021360.1 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780021420.1 Phenylpropanoid CAD medium borderline
Cretscaffold146_cov780021700.1 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780021780.1 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780021790.1 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780022080.1 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780022080.2 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780022080.3 Phenylpropanoid CAD low borderline
Cretscaffold146_cov780022080.4 Phenylpropanoid CAD low borderline
Cretscaffold1567_cov780023280.1 Phenylpropanoid CAD low borderline
Cretscaffold19799_cov1200031130.1 Phenylpropanoid CAD low borderline
Cretscaffold21121_cov450032700.1 Phenylpropanoid CAD medium pass
Cretscaffold2882_cov880049150.1 Phenylpropanoid CAD medium pass
Cretscaffold2882_cov880049280.1 Phenylpropanoid CAD low borderline
Cretscaffold2882_cov880049290.1 Phenylpropanoid CAD low borderline
Cretscaffold294_cov920052020.1 Phenylpropanoid CAD low borderline
Cretscaffold2964_cov920054810.1 Phenylpropanoid CAD low borderline
Cretscaffold2964_cov920054810.2 Phenylpropanoid CAD low borderline
Cretscaffold37361_cov910064810.1 Phenylpropanoid CAD medium pass
Cretscaffold4070_cov900075870.1 Phenylpropanoid CAD medium pass
Cretscaffold426_cov900079910.1 Phenylpropanoid CAD medium pass
Cretscaffold429_cov910083470.1 Phenylpropanoid CAD medium pass
Cretscaffold429_cov910083480.1 Phenylpropanoid CAD medium pass
Cretscaffold429_cov910083490.1 Phenylpropanoid CAD medium pass
Cretscaffold429_cov910083500.1 Phenylpropanoid CAD medium pass