PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
CLame659810074340 Phenylpropanoid C3'H/CYP98A medium borderline
CLame660090077100 Phenylpropanoid C3'H/CYP98A medium borderline
CLame660150077420 Phenylpropanoid C3'H/CYP98A medium borderline
CLame661400088570 Phenylpropanoid C3'H/CYP98A medium borderline
CLame661600090380 Phenylpropanoid C3'H/CYP98A medium borderline
CLame662070096180 Phenylpropanoid C3'H/CYP98A medium borderline
CLame662790104520 Phenylpropanoid C3'H/CYP98A medium borderline
CLame662790104530 Phenylpropanoid C3'H/CYP98A low borderline
CLame662800104610 Phenylpropanoid C3'H/CYP98A medium borderline
CLame662800104660 Phenylpropanoid C3'H/CYP98A medium borderline
CLame663220110360 Phenylpropanoid C3'H/CYP98A medium borderline
CLame664070120390 Phenylpropanoid C3'H/CYP98A low borderline
CLame664140121290 Phenylpropanoid C3'H/CYP98A medium pass
CLame664320123820 Phenylpropanoid C3'H/CYP98A low borderline
CLame664610127640 Phenylpropanoid C3'H/CYP98A low borderline
CLame664750129650 Phenylpropanoid C3'H/CYP98A medium borderline
CLame664750129660 Phenylpropanoid C3'H/CYP98A medium pass
CLame664790130410 Phenylpropanoid C3'H/CYP98A high pass
CLame664860132530 Phenylpropanoid C3'H/CYP98A low borderline
CLame664860132540 Phenylpropanoid C3'H/CYP98A low borderline
CLame665010135670 Phenylpropanoid C3'H/CYP98A low borderline
CLame665170138640 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665230139880 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665230139890 Phenylpropanoid C3'H/CYP98A low borderline
CLame665490145190 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665600147380 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665600147410 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665930153210 Phenylpropanoid C3'H/CYP98A medium borderline
CLame666000154620 Phenylpropanoid C3'H/CYP98A low borderline
CLame666000154680 Phenylpropanoid C3'H/CYP98A low borderline
CLame666030155380 Phenylpropanoid C3'H/CYP98A low borderline
CLame666330161280 Phenylpropanoid C3'H/CYP98A low borderline
CLame666330161300 Phenylpropanoid C3'H/CYP98A low borderline
CLame666330161340 Phenylpropanoid C3'H/CYP98A low borderline
CLame666410163430 Phenylpropanoid C3'H/CYP98A medium borderline
CLame666430164060 Phenylpropanoid C3'H/CYP98A medium borderline
CLame666540166540 Phenylpropanoid C3'H/CYP98A low borderline
CLame666890173770 Phenylpropanoid C3'H/CYP98A low borderline
CLame667040178430 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667070178780 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667200182760 Phenylpropanoid C3'H/CYP98A low borderline
CLame667310185680 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667450189310 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667550192540 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667550192560 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667630194730 Phenylpropanoid C3'H/CYP98A low borderline
CLame667750198670 Phenylpropanoid C3'H/CYP98A low borderline
CLame667760199100 Phenylpropanoid C3'H/CYP98A low borderline
CLame667830200970 Phenylpropanoid C3'H/CYP98A low borderline
CLame667830201000 Phenylpropanoid C3'H/CYP98A low borderline