PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
Reset
Gene Pathway Family Confidence Status
CLame667840201780 Phenylpropanoid C3'H/CYP98A low borderline
CLame667920203800 Phenylpropanoid C3'H/CYP98A low borderline
CLame667990205480 Phenylpropanoid C3'H/CYP98A low borderline
CLame668030206150 Phenylpropanoid C3'H/CYP98A low borderline
CLame668030206170 Phenylpropanoid C3'H/CYP98A low borderline
CLame668120208660 Phenylpropanoid C3'H/CYP98A medium borderline
CLame668500221090 Phenylpropanoid C3'H/CYP98A low borderline
CLame668620224760 Phenylpropanoid C3'H/CYP98A low borderline
CLame668620224770 Phenylpropanoid C3'H/CYP98A low borderline
CLame668950231390 Phenylpropanoid C3'H/CYP98A low borderline
CLame669030233770 Phenylpropanoid C3'H/CYP98A low borderline
CLame669180235460 Phenylpropanoid C3'H/CYP98A low borderline
CLame669180235510 Phenylpropanoid C3'H/CYP98A low borderline
CLame670410239260 Phenylpropanoid C3'H/CYP98A low borderline
CLame654160040850 Phenylpropanoid C4H/CYP73A low borderline
CLame654970044900 Phenylpropanoid C4H/CYP73A low borderline
CLame658330063100 Phenylpropanoid C4H/CYP73A low borderline
CLame666030155420 Phenylpropanoid C4H/CYP73A low borderline
CLame667510190550 Phenylpropanoid C4H/CYP73A medium borderline
CLame668030206420 Phenylpropanoid C4H/CYP73A low borderline
CLame669080234670 Phenylpropanoid C4H/CYP73A medium borderline
CLame631830015670 Phenylpropanoid CAD medium pass
CLame632150016130 Phenylpropanoid CAD medium borderline
CLame647340025450 Phenylpropanoid CAD low borderline
CLame653680039320 Phenylpropanoid CAD low borderline
CLame655720048590 Phenylpropanoid CAD low borderline
CLame656270050960 Phenylpropanoid CAD medium pass
CLame657490057580 Phenylpropanoid CAD medium borderline
CLame658050061010 Phenylpropanoid CAD medium pass
CLame658050061020 Phenylpropanoid CAD medium pass
CLame658120061270 Phenylpropanoid CAD medium pass
CLame658140061390 Phenylpropanoid CAD low borderline
CLame662100096580 Phenylpropanoid CAD medium borderline
CLame663960119380 Phenylpropanoid CAD low borderline
CLame664770129890 Phenylpropanoid CAD low borderline
CLame664790130570 Phenylpropanoid CAD low borderline
CLame665430143820 Phenylpropanoid CAD medium borderline
CLame666620167720 Phenylpropanoid CAD low borderline
CLame667000176260 Phenylpropanoid CAD low borderline
CLame667170181600 Phenylpropanoid CAD low borderline
CLame667790199700 Phenylpropanoid CAD medium borderline
CLame668370216580 Phenylpropanoid CAD low borderline
CLame668370216810 Phenylpropanoid CAD low borderline
CLame668370216820 Phenylpropanoid CAD low borderline
CLame641760020660 Phenylpropanoid CCR low borderline
CLame652830036720 Phenylpropanoid CCR medium borderline
CLame664400124720 Phenylpropanoid CCR medium borderline
CLame666630167910 Phenylpropanoid CCR medium borderline
CLame667530191650 Phenylpropanoid CCR low borderline
CLame606700011770 Phenylpropanoid CCoAOMT medium pass