PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
CLame664350123890 Steroid CAS low borderline
CLame665060135980 Steroid CAS medium pass
CLame665100137070 Steroid CAS low borderline
CLame666290160670 Steroid CAS medium pass
CLame666290160680 Steroid CAS medium pass
CLame666950175370 Steroid CAS medium pass
CLame667380187350 Steroid CAS medium pass
CLame667880202390 Steroid CAS medium pass
CLame667990205740 Steroid CAS low borderline
CLame669200236100 Steroid CAS medium pass
CLame669220236510 Steroid CAS medium pass
CLame613670013600 Steroid CPD/CYP90A1 medium borderline
CLame656390051470 Steroid CPD/CYP90A1 medium borderline
CLame662070096180 Steroid CPD/CYP90A1 medium borderline
CLame662430100150 Steroid CPD/CYP90A1 low borderline
CLame662790104520 Steroid CPD/CYP90A1 medium borderline
CLame666540166540 Steroid CPD/CYP90A1 medium borderline
CLame666540166750 Steroid CPD/CYP90A1 low borderline
CLame666890173770 Steroid CPD/CYP90A1 low borderline
CLame667760199100 Steroid CPD/CYP90A1 low borderline
CLame667840201780 Steroid CPD/CYP90A1 low borderline
CLame668950231390 Steroid CPD/CYP90A1 medium borderline
CLame661020085650 Steroid CPI1 high pass
CLame657460057200 Steroid CYP51G1 medium borderline
CLame665280141340 Steroid CYP51G1 medium borderline
CLame657090055350 Steroid CYP90D1 low borderline
CLame657090055360 Steroid CYP90D1 low borderline
CLame658010060610 Steroid CYP90D1 low borderline
CLame663220110360 Steroid CYP90D1 low borderline
CLame664070120390 Steroid CYP90D1 low borderline
CLame664320123820 Steroid CYP90D1 medium borderline
CLame664750129650 Steroid CYP90D1 low borderline
CLame664750129660 Steroid CYP90D1 low borderline
CLame666000154620 Steroid CYP90D1 low borderline
CLame666000154680 Steroid CYP90D1 low borderline
CLame667010176750 Steroid CYP90D1 low borderline
CLame667310185680 Steroid CYP90D1 low borderline
CLame668030206150 Steroid CYP90D1 low borderline
CLame668030206170 Steroid CYP90D1 low borderline
CLame668620224770 Steroid CYP90D1 low borderline
CLame670410239260 Steroid CYP90D1 low borderline
CLame656740052810 Steroid DET2 low borderline
CLame658400063640 Steroid DET2 medium pass
CLame661970094730 Steroid DET2 low borderline
CLame666920174170 Steroid DET2 medium borderline
CLame667970204570 Steroid DWF1 medium pass
CLame480070002690 Steroid DWF4/CYP90B1 low borderline
CLame542720007420 Steroid DWF4/CYP90B1 low borderline
CLame618190014820 Steroid DWF4/CYP90B1 low borderline
CLame635880017740 Steroid DWF4/CYP90B1 medium borderline