PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
CLame651650033530 Steroid DWF4/CYP90B1 low borderline
CLame654100040570 Steroid DWF4/CYP90B1 low borderline
CLame661400088570 Steroid DWF4/CYP90B1 medium borderline
CLame661600090380 Steroid DWF4/CYP90B1 low borderline
CLame662790104530 Steroid DWF4/CYP90B1 low borderline
CLame664610127640 Steroid DWF4/CYP90B1 low borderline
CLame664790130410 Steroid DWF4/CYP90B1 low borderline
CLame665490145190 Steroid DWF4/CYP90B1 low borderline
CLame665600147380 Steroid DWF4/CYP90B1 low borderline
CLame665600147410 Steroid DWF4/CYP90B1 low borderline
CLame666030155380 Steroid DWF4/CYP90B1 low borderline
CLame666330161280 Steroid DWF4/CYP90B1 low borderline
CLame666330161300 Steroid DWF4/CYP90B1 low borderline
CLame666330161340 Steroid DWF4/CYP90B1 low borderline
CLame666430164060 Steroid DWF4/CYP90B1 low borderline
CLame667040178430 Steroid DWF4/CYP90B1 low borderline
CLame667450189310 Steroid DWF4/CYP90B1 low borderline
CLame667550192540 Steroid DWF4/CYP90B1 low borderline
CLame667550192560 Steroid DWF4/CYP90B1 low borderline
CLame667750198640 Steroid DWF4/CYP90B1 medium borderline
CLame667750198670 Steroid DWF4/CYP90B1 low borderline
CLame667830200970 Steroid DWF4/CYP90B1 medium borderline
CLame667830201000 Steroid DWF4/CYP90B1 medium borderline
CLame667920203800 Steroid DWF4/CYP90B1 medium borderline
CLame667990205470 Steroid DWF4/CYP90B1 low borderline
CLame668110207810 Steroid DWF4/CYP90B1 low borderline
CLame669180235510 Steroid DWF4/CYP90B1 low borderline
CLame660780082790 Steroid DWF5 medium pass
CLame661760092250 Steroid DWF5 medium pass
CLame665710148450 Steroid DWF5 high pass
CLame666590167140 Steroid DWF5 medium pass
CLame666950175250 Steroid DWF5 medium pass
CLame662200097830 Steroid DWF7 medium pass
CLame659120068330 Steroid FK high pass
CLame647050025010 Steroid HYD1 high pass
CLame617000014490 Steroid ROT3/CYP90C1 low borderline
CLame667630194730 Steroid ROT3/CYP90C1 medium borderline
CLame668500221090 Steroid ROT3/CYP90C1 low borderline
CLame665930153250 Steroid SMO1/SMO2 medium pass
CLame670240239110 Steroid SMO1/SMO2 medium pass
CLame670630240410 Steroid SMO1/SMO2 low borderline
CLame476920001490 Steroid SMT1/SMT2/SMT3 low borderline
CLame542080007280 Steroid SMT1/SMT2/SMT3 low borderline
CLame646800024520 Steroid SMT1/SMT2/SMT3 low borderline
CLame650320030680 Steroid SMT1/SMT2/SMT3 low borderline
CLame654640042920 Steroid SMT1/SMT2/SMT3 low borderline
CLame657740059090 Steroid SMT1/SMT2/SMT3 low borderline
CLame660240078130 Steroid SMT1/SMT2/SMT3 low borderline
CLame661040085740 Steroid SMT1/SMT2/SMT3 low borderline
CLame662540101370 Steroid SMT1/SMT2/SMT3 medium pass