PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
CLame653220038050 Alkaloid COR medium pass
CLame660350078940 Alkaloid COR medium pass
CLame663680116250 Alkaloid COR medium pass
CLame666700169940 Alkaloid COR medium pass
CLame666870173420 Alkaloid COR medium pass
CLame666950175430 Alkaloid COR medium pass
CLame669200235650 Alkaloid COR medium pass
CLame661530089750 Alkaloid CYP719 low borderline
CLame664140121290 Alkaloid CYP719 medium borderline
CLame665230139890 Alkaloid CYP80B1 medium borderline
CLame480070002690 Alkaloid G8O/G8H medium borderline
CLame532200005650 Alkaloid G8O/G8H medium borderline
CLame635880017760 Alkaloid G8O/G8H medium borderline
CLame654970044900 Alkaloid G8O/G8H medium borderline
CLame655650048230 Alkaloid G8O/G8H low borderline
CLame658110061250 Alkaloid G8O/G8H medium borderline
CLame658330063100 Alkaloid G8O/G8H medium pass
CLame662800104650 Alkaloid G8O/G8H medium borderline
CLame664950133980 Alkaloid G8O/G8H medium borderline
CLame665600147380 Alkaloid G8O/G8H medium borderline
CLame666540166750 Alkaloid G8O/G8H medium borderline
CLame666900174060 Alkaloid G8O/G8H low borderline
CLame667310185680 Alkaloid G8O/G8H medium borderline
CLame668030206420 Alkaloid G8O/G8H low borderline
CLame670450239570 Alkaloid G8O/G8H medium borderline
CLame659200068620 Alkaloid GES medium pass
CLame666950175370 Alkaloid GES low borderline
CLame667380187350 Alkaloid GES low borderline
CLame606720011870 Alkaloid GS low borderline
CLame631830015670 Alkaloid GS high pass
CLame632480016380 Alkaloid GS low borderline
CLame636380018090 Alkaloid GS low borderline
CLame653680039320 Alkaloid GS low borderline
CLame653820039900 Alkaloid GS low borderline
CLame655720048590 Alkaloid GS low borderline
CLame656270050960 Alkaloid GS high pass
CLame658050061010 Alkaloid GS high pass
CLame658050061020 Alkaloid GS high pass
CLame658120061270 Alkaloid GS high pass
CLame658140061390 Alkaloid GS low borderline
CLame658490063850 Alkaloid GS low borderline
CLame659670073030 Alkaloid GS low borderline
CLame660590080760 Alkaloid GS low borderline
CLame661060086110 Alkaloid GS low borderline
CLame661060086120 Alkaloid GS low borderline
CLame661900093590 Alkaloid GS low borderline
CLame662940106520 Alkaloid GS low borderline
CLame663960119380 Alkaloid GS low borderline
CLame664350124000 Alkaloid GS medium pass
CLame664770129890 Alkaloid GS low borderline