PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
CLame664790130570 Alkaloid GS low borderline
CLame666320161220 Alkaloid GS low borderline
CLame666620167720 Alkaloid GS low borderline
CLame667000176260 Alkaloid GS low borderline
CLame667170181600 Alkaloid GS low borderline
CLame667840201820 Alkaloid GS low borderline
CLame668370216580 Alkaloid GS low borderline
CLame668370216810 Alkaloid GS low borderline
CLame668370216820 Alkaloid GS low borderline
CLame669060234240 Alkaloid GS low borderline
CLame648340026600 Alkaloid H6H medium borderline
CLame654760043750 Alkaloid H6H low borderline
CLame655360046900 Alkaloid H6H medium borderline
CLame659450070400 Alkaloid H6H low borderline
CLame661900093620 Alkaloid H6H medium borderline
CLame662120096730 Alkaloid H6H low borderline
CLame662120096740 Alkaloid H6H low borderline
CLame662190097630 Alkaloid H6H low borderline
CLame662620102430 Alkaloid H6H medium pass
CLame663940119120 Alkaloid H6H medium borderline
CLame664520126290 Alkaloid H6H medium borderline
CLame665260140920 Alkaloid H6H low borderline
CLame666780171130 Alkaloid H6H medium borderline
CLame667980205010 Alkaloid H6H low borderline
CLame668120208310 Alkaloid H6H medium borderline
CLame668920231180 Alkaloid H6H medium borderline
CLame669030233110 Alkaloid H6H medium borderline
CLame532030005260 Alkaloid IO medium borderline
CLame613670013600 Alkaloid IO medium borderline
CLame635880017740 Alkaloid IO medium borderline
CLame640490019190 Alkaloid IO medium borderline
CLame648690027340 Alkaloid IO low borderline
CLame649510029150 Alkaloid IO low borderline
CLame654160040860 Alkaloid IO high pass
CLame655200046040 Alkaloid IO medium borderline
CLame657460057200 Alkaloid IO medium borderline
CLame658010060610 Alkaloid IO medium borderline
CLame660090077100 Alkaloid IO medium borderline
CLame660150077420 Alkaloid IO medium borderline
CLame661400088570 Alkaloid IO medium borderline
CLame662070096180 Alkaloid IO medium borderline
CLame662790104520 Alkaloid IO medium borderline
CLame663290111050 Alkaloid IO medium borderline
CLame664790130410 Alkaloid IO medium borderline
CLame665010135670 Alkaloid IO medium borderline
CLame665230139880 Alkaloid IO medium borderline
CLame665600147410 Alkaloid IO medium borderline
CLame665930153210 Alkaloid IO medium borderline
CLame666430164060 Alkaloid IO medium borderline
CLame667010176750 Alkaloid IO low borderline