Climacium americanum (climacium_americanum)
Imported from atlas release summary for Climacium americanum.
648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
648
Candidate Genes
C4H
6.6%
POD
6.17%
C3'H/CYP98A
5.38%
BAHD
5.38%
4CL
4.77%
CYP76
3.79%
NMT
3.3%
IFS
3.3%
Other Families
61.31%
More Families (94)
PAL
51
3.12%
F3H
42
2.57%
STR
39
2.38%
IFR
37
2.26%
BR6OX2/CYP85A2
36
2.2%
F3'H/CYP75B
33
2.02%
UGT
33
2.02%
GS
32
1.96%
T3O
31
1.89%
DWF4/CYP90B1
31
1.89%
UFGT
30
1.83%
IO
28
1.71%
7DLGT
28
1.71%
CODM/T6ODM
26
1.59%
PYKS
26
1.59%
CAD
23
1.41%
SMT1/SMT2/SMT3
20
1.22%
CAS
20
1.22%
H6H
17
1.04%
TRI/TRII
17
1.04%
CYP71
17
1.04%
SLS
16
0.98%
CHS
16
0.98%
CYP90D1
16
0.98%
G8O/G8H
15
0.92%
CSE
15
0.92%
F3'5'H/CYP75A
14
0.86%
7DLH
13
0.79%
COMT
13
0.79%
NCS
12
0.73%
RAS
11
0.67%
CPD/CYP90A1
11
0.67%
SGD
10
0.61%
HCT
10
0.61%
LAMT
9
0.55%
16OMT
9
0.55%
LAC
9
0.55%
8HGO
8
0.49%
F5H/CYP84A
8
0.49%
COR
7
0.43%
ANR
7
0.43%
SQS/FDFT1
7
0.43%
BBE
6
0.37%
T16H
6
0.37%
CNMT
5
0.31%
TDC
5
0.31%
MPO
5
0.31%
PMT
5
0.31%
FNS
5
0.31%
CCR
5
0.31%
CPR
5
0.31%
BR6OX1/CYP85A1
5
0.31%
DWF5
5
0.31%
AACT
5
0.31%
CHI
4
0.24%
DET2
4
0.24%
GGPPS
4
0.24%
FPPS
4
0.24%
TPS
4
0.24%
MVD
4
0.24%
GES
3
0.18%
TYDC_DDC
3
0.18%
ADC
3
0.18%
FLS
3
0.18%
DFR
3
0.18%
TAT
3
0.18%
ROT3/CYP90C1
3
0.18%
SQE
3
0.18%
SMO1/SMO2
3
0.18%
MVK
3
0.18%
HDS/IspG
3
0.18%
MDS/IspF
3
0.18%
6OMT_4OMT_SOMT
2
0.12%
CYP719
2
0.12%
CCoAOMT
2
0.12%
CYP51G1
2
0.12%
HMGS
2
0.12%
MCT/IspD
2
0.12%
ISY
1
0.06%
CYP80B1
1
0.06%
ANS/LDOX
1
0.06%
HPPR
1
0.06%
HYD1
1
0.06%
FK
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
HDR/IspH
1
0.06%
CMK/IspE
1
0.06%
PMK
1
0.06%
DXR
1
0.06%
DXS
1
0.06%
HMGR
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 173 | 10 | POD (95) | View species results |
| Terpenoid pathway | 155 | 19 | BAHD (57) | View species results |
| Alkaloid pathway | 119 | 18 | NMT (27) | View species results |
| Flavonoid pathway | 88 | 8 | UFGT (28) | View species results |
| Rosmarinic acid pathway | 73 | 7 | C4H (30) | View species results |
| Steroid pathway | 40 | 12 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 600 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 109 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CLame661070086290 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame662790104460 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame664210122300 | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame664250123250 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame664910133080 | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame665150138040 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame665530146310 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame666020155180 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame666350161850 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame667250183920 | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame668310214600 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| CLame480070002690 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| CLame532030005260 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| CLame532200005650 | Terpenoid | CYP76 | low | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| CLame613670013600 | Terpenoid | CYP76 | medium | pass | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| CLame635880017740 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| CLame635880017760 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| CLame640490019190 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| CLame649510029150 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| CLame654160040860 | Terpenoid | CYP76 | medium | pass | CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF |
| CLame654970044900 | Terpenoid | CYP76 | medium | pass | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| CLame655200046040 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| CLame656040049900 | Terpenoid | CYP76 | medium | pass | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| CLame656040049970 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| CLame656640052160 | Terpenoid | CYP76 | medium | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| CLame657460057200 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| CLame658010060610 | Terpenoid | CYP76 | medium | pass | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| CLame658110061250 | Terpenoid | CYP76 | low | borderline | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| CLame658330063090 | Terpenoid | CYP76 | medium | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| CLame658330063100 | Terpenoid | CYP76 | medium | pass | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| CLame658830066340 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| CLame659810074340 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| CLame660090077100 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| CLame660150077420 | Terpenoid | CYP76 | medium | pass | CYP76__00023__sp_S4UX02_CYPH1_SALMI |
| CLame661400088570 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| CLame661600090380 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| CLame662070096180 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| CLame662790104520 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| CLame662800104610 | Terpenoid | CYP76 | medium | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| CLame662800104660 | Terpenoid | CYP76 | medium | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| CLame663220110360 | Terpenoid | CYP76 | medium | borderline | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| CLame663290111050 | Terpenoid | CYP76 | medium | pass | CYP76__00023__sp_S4UX02_CYPH1_SALMI |
| CLame664070120390 | Terpenoid | CYP76 | medium | borderline | CYP76__00021__sp_Q6Z5I7_C76M6_ORYSJ |
| CLame664140121290 | Terpenoid | CYP76 | low | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| CLame664750129650 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| CLame664750129660 | Terpenoid | CYP76 | medium | pass | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| CLame664750129670 | Terpenoid | CYP76 | medium | pass | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| CLame664790130410 | Terpenoid | CYP76 | medium | pass | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| CLame664950133980 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| CLame665010135670 | Terpenoid | CYP76 | low | borderline | CYP76__00024__sp_W0FKI0_DOX1_PERHD |