PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
CLame665170138640 Terpenoid CYP76 medium borderline
CLame665230139880 Terpenoid CYP76 medium pass
CLame665230139890 Terpenoid CYP76 medium pass
CLame665280141340 Terpenoid CYP76 low borderline
CLame665490145190 Terpenoid CYP76 medium borderline
CLame665600147380 Terpenoid CYP76 medium pass
CLame665600147410 Terpenoid CYP76 medium pass
CLame665930153210 Terpenoid CYP76 medium borderline
CLame666410163430 Terpenoid CYP76 medium pass
CLame666430164060 Terpenoid CYP76 medium borderline
CLame666540166750 Terpenoid CYP76 medium pass
CLame667040178430 Terpenoid CYP76 medium borderline
CLame667070178780 Terpenoid CYP76 medium pass
CLame667200182760 Terpenoid CYP76 low borderline
CLame667310185680 Terpenoid CYP76 medium pass
CLame667450189310 Terpenoid CYP76 medium pass
CLame667510190550 Terpenoid CYP76 medium pass
CLame667550192540 Terpenoid CYP76 medium pass
CLame667550192560 Terpenoid CYP76 medium borderline
CLame668110207810 Terpenoid CYP76 medium pass
CLame668120208660 Terpenoid CYP76 medium borderline
CLame669080234670 Terpenoid CYP76 medium pass
CLame670450239570 Terpenoid CYP76 medium borderline
CLame667420188770 Terpenoid DXR high pass
CLame668500220950 Terpenoid DXS medium pass
CLame654130040680 Terpenoid FPPS medium pass
CLame654130040740 Terpenoid FPPS medium pass
CLame662440100210 Terpenoid FPPS medium pass
CLame664810131260 Terpenoid FPPS medium pass
CLame642950021760 Terpenoid GGPPS medium borderline
CLame655500047330 Terpenoid GGPPS medium borderline
CLame665070136450 Terpenoid GGPPS medium borderline
CLame665100137360 Terpenoid GGPPS medium borderline
CLame640350018910 Terpenoid HDR/IspH high pass
CLame657100055370 Terpenoid HDS/IspG high pass
CLame661670091020 Terpenoid HDS/IspG high pass
CLame661680091430 Terpenoid HDS/IspG low borderline
CLame668690226850 Terpenoid HMGR medium pass
CLame660500079370 Terpenoid HMGS low borderline
CLame662030095570 Terpenoid HMGS high pass
CLame668950231350 Terpenoid IDI medium pass
CLame660730082240 Terpenoid MCT/IspD low borderline
CLame662440100250 Terpenoid MCT/IspD high pass
CLame659440070360 Terpenoid MDS/IspF low borderline
CLame659440070380 Terpenoid MDS/IspF high pass
CLame669000232330 Terpenoid MDS/IspF high pass
CLame661490089550 Terpenoid MVD low borderline
CLame664740129320 Terpenoid MVD medium pass
CLame665890152710 Terpenoid MVD low borderline
CLame667020177320 Terpenoid MVD low borderline