Climacium americanum (climacium_americanum)
Imported from atlas release summary for Climacium americanum.
877
Candidate Protein Records
648
Pathway-Level Records
1636
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1636
Family-Level Calls
C4H
6.6%
POD
6.17%
C3'H/CYP98A
5.38%
BAHD
5.38%
4CL
4.77%
CYP76
3.79%
NMT
3.3%
IFS
3.3%
Other Families
61.31%
More Families (94)
PAL
51
3.12%
F3H
42
2.57%
STR
39
2.38%
IFR
37
2.26%
BR6OX2/CYP85A2
36
2.2%
F3'H/CYP75B
33
2.02%
UGT
33
2.02%
GS
32
1.96%
T3O
31
1.89%
DWF4/CYP90B1
31
1.89%
UFGT
30
1.83%
IO
28
1.71%
7DLGT
28
1.71%
CODM/T6ODM
26
1.59%
PYKS
26
1.59%
CAD
23
1.41%
SMT1/SMT2/SMT3
20
1.22%
CAS
20
1.22%
H6H
17
1.04%
TRI/TRII
17
1.04%
CYP71
17
1.04%
SLS
16
0.98%
CHS
16
0.98%
CYP90D1
16
0.98%
G8O/G8H
15
0.92%
CSE
15
0.92%
F3'5'H/CYP75A
14
0.86%
7DLH
13
0.79%
COMT
13
0.79%
NCS
12
0.73%
RAS
11
0.67%
CPD/CYP90A1
11
0.67%
SGD
10
0.61%
HCT
10
0.61%
LAMT
9
0.55%
16OMT
9
0.55%
LAC
9
0.55%
8HGO
8
0.49%
F5H/CYP84A
8
0.49%
COR
7
0.43%
ANR
7
0.43%
SQS/FDFT1
7
0.43%
BBE
6
0.37%
T16H
6
0.37%
CNMT
5
0.31%
TDC
5
0.31%
MPO
5
0.31%
PMT
5
0.31%
FNS
5
0.31%
CCR
5
0.31%
CPR
5
0.31%
BR6OX1/CYP85A1
5
0.31%
DWF5
5
0.31%
AACT
5
0.31%
CHI
4
0.24%
DET2
4
0.24%
GGPPS
4
0.24%
FPPS
4
0.24%
TPS
4
0.24%
MVD
4
0.24%
GES
3
0.18%
TYDC_DDC
3
0.18%
ADC
3
0.18%
FLS
3
0.18%
DFR
3
0.18%
TAT
3
0.18%
ROT3/CYP90C1
3
0.18%
SQE
3
0.18%
SMO1/SMO2
3
0.18%
MVK
3
0.18%
HDS/IspG
3
0.18%
MDS/IspF
3
0.18%
6OMT_4OMT_SOMT
2
0.12%
CYP719
2
0.12%
CCoAOMT
2
0.12%
CYP51G1
2
0.12%
HMGS
2
0.12%
MCT/IspD
2
0.12%
ISY
1
0.06%
CYP80B1
1
0.06%
ANS/LDOX
1
0.06%
HPPR
1
0.06%
HYD1
1
0.06%
FK
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
HDR/IspH
1
0.06%
CMK/IspE
1
0.06%
PMK
1
0.06%
DXR
1
0.06%
DXS
1
0.06%
HMGR
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 173 | 10 | POD (95) | View species results |
| Terpenoid pathway | 155 | 19 | BAHD (57) | View species results |
| Alkaloid pathway | 119 | 18 | NMT (27) | View species results |
| Flavonoid pathway | 88 | 8 | UFGT (28) | View species results |
| Rosmarinic acid pathway | 73 | 7 | C4H (30) | View species results |
| Steroid pathway | 40 | 12 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 600 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 109 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CLame663680116180 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| CLame664650128020 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| CLame665080136630 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| CLame665080136650 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| CLame666410163340 | Phenylpropanoid | LAC | medium | pass | LAC__00003__sp_Q84J37_LAC15_ARATH |
| CLame666680169200 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| CLame618030014580 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame635670017540 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame644640022200 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame644640022220 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame648320026490 | Phenylpropanoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| CLame648650027290 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame649250028490 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame654390042100 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame655780048710 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame656810053510 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame658050061090 | Phenylpropanoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| CLame660170077600 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame660760082670 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame661330087710 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame666570166860 | Phenylpropanoid | PAL | low | borderline | PAL__00004__sp_P45725_PAL3_ARATH |
| CLame667280185020 | Phenylpropanoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| CLame670680240790 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| CLame532260005780 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame563570008220 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame564350008700 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame635350017210 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| CLame636370018010 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| CLame636530018230 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| CLame641890020800 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame648220026210 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame649410029020 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame651950034540 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| CLame652330035290 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame652970037080 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| CLame652970037090 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| CLame653970040340 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| CLame654670043170 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| CLame657430056890 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| CLame659540071950 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| CLame659670072950 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame659670072960 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame659700073260 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| CLame660020076140 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame660020076160 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame660560080390 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame660670081760 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| CLame660870083930 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame660940085060 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame661420088930 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |