PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%
Family Distribution
C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%
Other Families 62.3%
More Families (98)
UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
GbarA05G0021160 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
GbarA05G0021170 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
GbarA05G0024160 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarA05G0026080 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
GbarA05G0027290 Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH
GbarA05G0029720 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
GbarA05G0031580 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
GbarA05G0033160 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA05G0034400 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA05G0034640 Terpenoid BAHD medium pass BAHD__00031__sp_P0DO25_AT9_ACTDE
GbarA05G0035240 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarA05G0036140 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
GbarA05G0036800 Terpenoid BAHD medium pass BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
GbarA05G0039220 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
GbarA05G0043070 Terpenoid BAHD low borderline BAHD__00032__sp_P0DO84_AT_STRNX
GbarA05G0043080 Terpenoid BAHD low borderline BAHD__00024__sp_O23393_BIA1_ARATH
GbarA05G0043140 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
GbarA06G0000700 Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
GbarA06G0000830 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
GbarA06G0001110 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
GbarA06G0001160 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
GbarA06G0001950 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA06G0001960 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA06G0001990 Terpenoid BAHD low borderline BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
GbarA06G0004340 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
GbarA06G0005640 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
GbarA06G0006540 Terpenoid BAHD low borderline BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
GbarA06G0007680 Terpenoid BAHD medium pass BAHD__00092__sp_Q9SU91_LPXA_ARATH
GbarA06G0008110 Terpenoid BAHD medium pass BAHD__00075__sp_Q9FJB4_GPC1_ARATH
GbarA06G0008170 Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
GbarA06G0010590 Terpenoid BAHD medium pass BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
GbarA06G0013910 Terpenoid BAHD low borderline BAHD__00028__sp_O80467_SDT_ARATH
GbarA06G0014520 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarA06G0017840 Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
GbarA06G0022080 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA06G0022090 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA06G0022110 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
GbarA06G0022150 Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
GbarA06G0022170 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA06G0022190 Terpenoid BAHD low borderline BAHD__00030__sp_O80816_GLC_ARATH
GbarA06G0023950 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
GbarA07G0000030 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
GbarA07G0001320 Terpenoid BAHD medium pass BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
GbarA07G0003210 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
GbarA07G0005500 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarA07G0009080 Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
GbarA07G0010700 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
GbarA07G0011680 Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
GbarA07G0012600 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
GbarA07G0012610 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH