PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%
Family Distribution
C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%
Other Families 62.3%
More Families (98)
UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
GbarA01G0005260 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA01G0006430 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA01G0012920 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA01G0013500 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA01G0014350 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA01G0016530 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA01G0021130 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
GbarA01G0021710 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA01G0023550 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
GbarA02G0012460 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA02G0013340 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA02G0013970 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA02G0014240 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA02G0014700 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA02G0020310 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
GbarA02G0020320 Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
GbarA03G0010560 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA03G0019900 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA03G0019910 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA04G0002830 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0002120 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0007140 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0011630 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0012500 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0012510 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0012520 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0012530 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0013320 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0027720 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0029110 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0034820 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0035910 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0037250 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0037270 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0040370 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA05G0041590 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA06G0006450 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA07G0000290 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA07G0005610 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA07G0006440 Alkaloid STR medium pass STR__00002__sp_P68175_STSY_RAUSE
GbarA07G0006450 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
GbarA07G0006460 Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
GbarA07G0006740 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA07G0011370 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA07G0012440 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
GbarA07G0014210 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA07G0014220 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA08G0002940 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA08G0009470 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
GbarA08G0013590 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR