PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%
Family Distribution
C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%
Other Families 62.3%
More Families (98)
UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
GbarD04G0000670 Terpenoid BAHD low borderline BAHD__00024__sp_O23393_BIA1_ARATH
GbarD04G0004460 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
GbarD04G0006630 Terpenoid BAHD medium pass BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
GbarD04G0006970 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarD04G0007220 Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
GbarD04G0007720 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarD04G0008750 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
GbarD04G0008760 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
GbarD04G0009140 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
GbarD04G0010360 Terpenoid BAHD low borderline BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
GbarD04G0014200 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarD04G0014260 Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
GbarD04G0015600 Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
GbarD04G0015740 Terpenoid BAHD low borderline BAHD__00047__sp_Q5KS41_WSD11_ARATH
GbarD04G0015750 Terpenoid BAHD low borderline BAHD__00047__sp_Q5KS41_WSD11_ARATH
GbarD04G0016390 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD04G0016400 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD04G0016460 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD04G0018610 Terpenoid BAHD medium pass BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
GbarD04G0020170 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
GbarD04G0021040 Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
GbarD05G0005410 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0005430 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0005480 Terpenoid BAHD medium pass BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
GbarD05G0005530 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0005900 Terpenoid BAHD medium pass BAHD__00095__sp_Q9SZ58_BRAT1_ARATH
GbarD05G0007520 Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
GbarD05G0007710 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
GbarD05G0011730 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarD05G0011740 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarD05G0011750 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarD05G0011870 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0013940 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
GbarD05G0018210 Terpenoid BAHD medium pass BAHD__00050__sp_Q6DR03_ZDHC3_ARATH
GbarD05G0018350 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
GbarD05G0019190 Terpenoid BAHD medium pass BAHD__00023__sp_O22975_LPAAT_ARATH
GbarD05G0020420 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
GbarD05G0021470 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
GbarD05G0024350 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD05G0026320 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
GbarD05G0027480 Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH
GbarD05G0029900 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
GbarD05G0031690 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
GbarD05G0034570 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0036250 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
GbarD05G0036260 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD05G0036270 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD05G0038650 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
GbarD05G0039650 Terpenoid BAHD medium pass BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
GbarD05G0039660 Terpenoid BAHD medium pass BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH