PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
GbarD10G0022820 Alkaloid 16OMT medium borderline
GbarD10G0022840 Alkaloid 16OMT medium borderline
GbarD12G0003650 Alkaloid 16OMT medium borderline
GbarD12G0003670 Alkaloid 16OMT medium borderline
GbarD12G0026360 Alkaloid 16OMT medium borderline
GbarD12G0026370 Alkaloid 16OMT medium borderline
GbarD12G0026800 Alkaloid 16OMT medium borderline
GbarD13G0018540 Alkaloid 16OMT medium borderline
GbarD13G0018550 Alkaloid 16OMT medium borderline
Gbarscaffold1821_obj_D040001510 Alkaloid 16OMT medium borderline
Gbarscaffold239_obj0002430 Alkaloid 16OMT medium borderline
GbarA03G0018130 Alkaloid 6OMT_4OMT_SOMT medium pass
GbarA04G0015120 Alkaloid 6OMT_4OMT_SOMT medium borderline
GbarA06G0015560 Alkaloid 6OMT_4OMT_SOMT medium pass
GbarD10G0022810 Alkaloid 6OMT_4OMT_SOMT medium borderline
GbarD12G0003660 Alkaloid 6OMT_4OMT_SOMT medium pass
GbarA01G0005540 Alkaloid 7DLGT low borderline
GbarA01G0005550 Alkaloid 7DLGT low borderline
GbarA01G0005560 Alkaloid 7DLGT low borderline
GbarA01G0005730 Alkaloid 7DLGT low borderline
GbarA01G0007530 Alkaloid 7DLGT medium pass
GbarA01G0012980 Alkaloid 7DLGT low borderline
GbarA01G0015030 Alkaloid 7DLGT medium pass
GbarA01G0021120 Alkaloid 7DLGT low borderline
GbarA02G0000680 Alkaloid 7DLGT medium pass
GbarA02G0001380 Alkaloid 7DLGT low borderline
GbarA02G0003320 Alkaloid 7DLGT medium pass
GbarA02G0006330 Alkaloid 7DLGT high pass
GbarA02G0006350 Alkaloid 7DLGT low borderline
GbarA02G0006360 Alkaloid 7DLGT medium pass
GbarA02G0011690 Alkaloid 7DLGT medium pass
GbarA02G0016500 Alkaloid 7DLGT low borderline
GbarA02G0016730 Alkaloid 7DLGT medium pass
GbarA02G0016740 Alkaloid 7DLGT medium pass
GbarA02G0019020 Alkaloid 7DLGT medium pass
GbarA03G0002750 Alkaloid 7DLGT high pass
GbarA03G0004060 Alkaloid 7DLGT medium pass
GbarA03G0006230 Alkaloid 7DLGT medium pass
GbarA03G0006250 Alkaloid 7DLGT low borderline
GbarA03G0006260 Alkaloid 7DLGT low borderline
GbarA03G0008600 Alkaloid 7DLGT low borderline
GbarA03G0008610 Alkaloid 7DLGT low borderline
GbarA03G0020960 Alkaloid 7DLGT low borderline
GbarA03G0020970 Alkaloid 7DLGT low borderline
GbarA03G0020980 Alkaloid 7DLGT medium pass
GbarA04G0000390 Alkaloid 7DLGT high pass
GbarA04G0008730 Alkaloid 7DLGT low borderline
GbarA04G0008740 Alkaloid 7DLGT medium pass
GbarA04G0008760 Alkaloid 7DLGT medium pass
GbarA04G0010550 Alkaloid 7DLGT medium pass