PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GbarD10G0016020 Alkaloid PYKS low borderline
GbarD10G0024110 Alkaloid PYKS low borderline
GbarD10G0024450 Alkaloid PYKS low borderline
GbarD11G0002600 Alkaloid PYKS low borderline
GbarD12G0003170 Alkaloid PYKS high pass
GbarD12G0013410 Alkaloid PYKS low borderline
GbarD13G0021580 Alkaloid PYKS low borderline
Gbarscaffold1143_obj_A100000260 Alkaloid PYKS high pass
GbarA01G0023420 Alkaloid SGD medium pass
GbarA01G0023560 Alkaloid SGD medium pass
GbarA01G0023810 Alkaloid SGD medium pass
GbarA02G0013480 Alkaloid SGD low borderline
GbarA05G0007390 Alkaloid SGD medium pass
GbarA06G0012990 Alkaloid SGD medium pass
GbarA06G0017150 Alkaloid SGD medium pass
GbarA06G0017160 Alkaloid SGD medium pass
GbarA07G0008390 Alkaloid SGD low borderline
GbarA07G0008400 Alkaloid SGD medium pass
GbarA08G0026740 Alkaloid SGD medium pass
GbarA08G0027170 Alkaloid SGD medium pass
GbarA08G0027180 Alkaloid SGD medium pass
GbarA09G0006900 Alkaloid SGD medium pass
GbarA09G0008470 Alkaloid SGD low borderline
GbarA10G0001380 Alkaloid SGD medium pass
GbarA10G0001390 Alkaloid SGD medium pass
GbarA10G0001400 Alkaloid SGD medium pass
GbarA11G0033710 Alkaloid SGD medium pass
GbarA11G0034720 Alkaloid SGD medium pass
GbarA12G0018110 Alkaloid SGD medium pass
GbarA12G0027180 Alkaloid SGD medium pass
GbarA13G0008910 Alkaloid SGD medium pass
GbarA13G0008920 Alkaloid SGD medium pass
GbarA13G0008930 Alkaloid SGD medium pass
GbarA13G0016760 Alkaloid SGD medium pass
GbarA13G0017000 Alkaloid SGD medium pass
GbarD01G0024200 Alkaloid SGD low borderline
GbarD01G0024340 Alkaloid SGD medium pass
GbarD01G0024350 Alkaloid SGD medium pass
GbarD05G0007350 Alkaloid SGD medium pass
GbarD06G0012330 Alkaloid SGD medium pass
GbarD06G0017370 Alkaloid SGD medium pass
GbarD06G0017390 Alkaloid SGD medium pass
GbarD07G0008430 Alkaloid SGD medium pass
GbarD08G0026690 Alkaloid SGD medium pass
GbarD08G0027150 Alkaloid SGD medium pass
GbarD09G0006270 Alkaloid SGD medium pass
GbarD09G0008030 Alkaloid SGD low borderline
GbarD10G0001490 Alkaloid SGD medium pass
GbarD10G0001500 Alkaloid SGD medium pass
GbarD11G0033870 Alkaloid SGD medium pass