Gossypium barbadense (gossypium_barbadense)
Imported from atlas release summary for Gossypium barbadense.
4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
9305
Family-Level Calls
C4H
6.96%
C3'H/CYP98A
6.11%
BAHD
5.39%
CYP76
4.07%
IFS
4.05%
T3O
3.86%
F3H
3.63%
POD
3.61%
Other Families
62.3%
More Families (98)
UGT
316
3.4%
4CL
315
3.39%
7DLGT
282
3.03%
UFGT
276
2.97%
NMT
204
2.19%
DWF4/CYP90B1
192
2.06%
BR6OX2/CYP85A2
185
1.99%
CODM/T6ODM
177
1.9%
F3'H/CYP75B
169
1.82%
H6H
166
1.78%
STR
166
1.78%
CAD
135
1.45%
LAC
134
1.44%
CYP71
126
1.35%
CAS
121
1.3%
CYP90D1
116
1.25%
TRI/TRII
114
1.23%
SMT1/SMT2/SMT3
113
1.21%
TPS
105
1.13%
GES
100
1.07%
HCT
95
1.02%
CSE
93
1.0%
GS
86
0.92%
COMT
84
0.9%
7DLH
82
0.88%
RAS
78
0.84%
T16H
74
0.8%
IFR
67
0.72%
PYKS
64
0.69%
G8O/G8H
63
0.68%
IO
63
0.68%
16OMT
61
0.66%
F3'5'H/CYP75A
61
0.66%
F5H/CYP84A
57
0.61%
BBE
56
0.6%
ANR
53
0.57%
NCS
51
0.55%
SGD
50
0.54%
FNS
50
0.54%
CPD/CYP90A1
50
0.54%
CCR
46
0.49%
COR
45
0.48%
TAT
45
0.48%
PMT
44
0.47%
ROT3/CYP90C1
41
0.44%
CYP51G1
40
0.43%
PAL
39
0.42%
SLS
37
0.4%
BR6OX1/CYP85A1
37
0.4%
GGPPS
29
0.31%
8HGO
27
0.29%
CNMT
27
0.29%
DFR
27
0.29%
ANS/LDOX
26
0.28%
SQE
26
0.28%
LAMT
23
0.25%
FPPS
22
0.24%
MPO
20
0.21%
CPR
20
0.21%
CHS
18
0.19%
CCoAOMT
17
0.18%
SQS/FDFT1
17
0.18%
ISY
16
0.17%
CYP719
15
0.16%
SMO1/SMO2
15
0.16%
TYDC_DDC
14
0.15%
HMGR
14
0.15%
CYP80B1
13
0.14%
AACT
13
0.14%
DXS
13
0.14%
HPPR
12
0.13%
MVD
12
0.13%
DET2
11
0.12%
MVK
11
0.12%
TDC
10
0.11%
HMGS
9
0.1%
CHI
8
0.09%
ADC
7
0.08%
MCT/IspD
7
0.08%
CYP80F1
6
0.06%
FLS
6
0.06%
HDR/IspH
6
0.06%
DXR
6
0.06%
ODC
5
0.05%
6OMT_4OMT_SOMT
5
0.05%
XMT_MXMT_DXMT
5
0.05%
DWF1
5
0.05%
DWF5
5
0.05%
MDS/IspF
5
0.05%
CPI1
3
0.03%
HYD1
3
0.03%
FK
2
0.02%
DWF7
2
0.02%
CMK/IspE
2
0.02%
HDS/IspG
2
0.02%
IDI
2
0.02%
GPPS
2
0.02%
PMK
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1055 | 21 | BAHD (388) | View species results |
| Alkaloid pathway | 824 | 25 | 7DLGT (140) | View species results |
| Phenylpropanoid pathway | 824 | 12 | POD (325) | View species results |
| Flavonoid pathway | 411 | 13 | UFGT (256) | View species results |
| Rosmarinic acid pathway | 307 | 7 | C4H (123) | View species results |
| Steroid pathway | 224 | 12 | CAS (104) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3759 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 675 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GbarA09G0012550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0012840 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0013220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0014810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0015440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0022300 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA09G0022340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA09G0022810 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA10G0006600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA10G0006610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA10G0007810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA10G0019230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA10G0022550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0021370 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0021380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0022100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0024100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0034030 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA11G0037120 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA12G0017650 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA12G0019100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA12G0022170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA12G0029050 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA13G0011220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA13G0020610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA13G0021920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA13G0025950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0005070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0005220 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD01G0005340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD01G0006350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0013940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0014250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0015490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0017470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0022050 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD01G0022550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0024330 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD02G0013060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD02G0021560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD02G0021580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD03G0000300 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD03G0000310 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD03G0006150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD03G0007280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD03G0007730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD03G0007860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD03G0008510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD04G0002230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD04G0003350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |