PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
GbarA09G0022740 Alkaloid 7DLGT low borderline
GbarA09G0022750 Alkaloid 7DLGT low borderline
GbarA10G0013270 Alkaloid 7DLGT medium pass
GbarA10G0015870 Alkaloid 7DLGT medium pass
GbarA10G0019100 Alkaloid 7DLGT low borderline
GbarA10G0019110 Alkaloid 7DLGT medium pass
GbarA10G0019120 Alkaloid 7DLGT medium pass
GbarA10G0025040 Alkaloid 7DLGT medium pass
GbarA10G0025050 Alkaloid 7DLGT medium pass
GbarA10G0025060 Alkaloid 7DLGT medium pass
GbarA10G0025070 Alkaloid 7DLGT medium pass
GbarA10G0025080 Alkaloid 7DLGT high pass
GbarA10G0026060 Alkaloid 7DLGT low borderline
GbarA11G0005460 Alkaloid 7DLGT high pass
GbarA11G0009950 Alkaloid 7DLGT medium pass
GbarA11G0013580 Alkaloid 7DLGT high pass
GbarA11G0014720 Alkaloid 7DLGT low borderline
GbarA11G0014730 Alkaloid 7DLGT low borderline
GbarA11G0021790 Alkaloid 7DLGT low borderline
GbarA11G0023430 Alkaloid 7DLGT low borderline
GbarA11G0036880 Alkaloid 7DLGT low borderline
GbarA12G0001420 Alkaloid 7DLGT medium pass
GbarA12G0002130 Alkaloid 7DLGT medium pass
GbarA12G0004820 Alkaloid 7DLGT medium pass
GbarA12G0004830 Alkaloid 7DLGT low borderline
GbarA12G0006670 Alkaloid 7DLGT medium pass
GbarA12G0006680 Alkaloid 7DLGT high pass
GbarA12G0012740 Alkaloid 7DLGT low borderline
GbarA12G0017780 Alkaloid 7DLGT medium pass
GbarA12G0018890 Alkaloid 7DLGT high pass
GbarA12G0020060 Alkaloid 7DLGT low borderline
GbarA12G0020080 Alkaloid 7DLGT low borderline
GbarA12G0022390 Alkaloid 7DLGT medium pass
GbarA13G0001860 Alkaloid 7DLGT low borderline
GbarA13G0001890 Alkaloid 7DLGT low borderline
GbarA13G0001910 Alkaloid 7DLGT low borderline
GbarA13G0004190 Alkaloid 7DLGT low borderline
GbarA13G0004200 Alkaloid 7DLGT low borderline
GbarA13G0007160 Alkaloid 7DLGT high pass
GbarA13G0007190 Alkaloid 7DLGT high pass
GbarA13G0007260 Alkaloid 7DLGT high pass
GbarA13G0009100 Alkaloid 7DLGT low borderline
GbarA13G0018290 Alkaloid 7DLGT medium pass
GbarA13G0018300 Alkaloid 7DLGT low borderline
GbarA13G0026270 Alkaloid 7DLGT low borderline
GbarA13G0026280 Alkaloid 7DLGT low borderline
GbarA13G0026290 Alkaloid 7DLGT low borderline
GbarD01G0005490 Alkaloid 7DLGT low borderline
GbarD01G0005500 Alkaloid 7DLGT low borderline
GbarD01G0005600 Alkaloid 7DLGT low borderline