PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
GbarD10G0026370 Alkaloid 7DLGT medium pass
GbarD10G0026380 Alkaloid 7DLGT medium pass
GbarD10G0026400 Alkaloid 7DLGT medium pass
GbarD10G0026410 Alkaloid 7DLGT high pass
GbarD10G0027160 Alkaloid 7DLGT low borderline
GbarD11G0007790 Alkaloid 7DLGT medium pass
GbarD11G0010230 Alkaloid 7DLGT low borderline
GbarD11G0010240 Alkaloid 7DLGT medium pass
GbarD11G0010250 Alkaloid 7DLGT medium pass
GbarD11G0013900 Alkaloid 7DLGT high pass
GbarD11G0014990 Alkaloid 7DLGT low borderline
GbarD11G0018020 Alkaloid 7DLGT low borderline
GbarD11G0021110 Alkaloid 7DLGT low borderline
GbarD11G0022570 Alkaloid 7DLGT low borderline
GbarD11G0033640 Alkaloid 7DLGT low borderline
GbarD11G0037170 Alkaloid 7DLGT low borderline
GbarD12G0000700 Alkaloid 7DLGT medium pass
GbarD12G0001510 Alkaloid 7DLGT medium pass
GbarD12G0002270 Alkaloid 7DLGT low borderline
GbarD12G0004950 Alkaloid 7DLGT medium pass
GbarD12G0004960 Alkaloid 7DLGT medium pass
GbarD12G0006760 Alkaloid 7DLGT low borderline
GbarD12G0006770 Alkaloid 7DLGT medium pass
GbarD12G0006780 Alkaloid 7DLGT medium pass
GbarD12G0012430 Alkaloid 7DLGT low borderline
GbarD12G0012900 Alkaloid 7DLGT low borderline
GbarD12G0017730 Alkaloid 7DLGT low borderline
GbarD12G0018890 Alkaloid 7DLGT medium pass
GbarD12G0020040 Alkaloid 7DLGT low borderline
GbarD12G0020050 Alkaloid 7DLGT medium pass
GbarD12G0020060 Alkaloid 7DLGT medium pass
GbarD12G0022570 Alkaloid 7DLGT medium pass
GbarD12G0027660 Alkaloid 7DLGT medium pass
GbarD12G0027670 Alkaloid 7DLGT medium pass
GbarD13G0001900 Alkaloid 7DLGT low borderline
GbarD13G0004130 Alkaloid 7DLGT low borderline
GbarD13G0004140 Alkaloid 7DLGT low borderline
GbarD13G0004150 Alkaloid 7DLGT low borderline
GbarD13G0005440 Alkaloid 7DLGT high pass
GbarD13G0005450 Alkaloid 7DLGT high pass
GbarD13G0008230 Alkaloid 7DLGT low borderline
GbarD13G0017820 Alkaloid 7DLGT medium pass
GbarD13G0025200 Alkaloid 7DLGT low borderline
GbarD13G0026170 Alkaloid 7DLGT medium pass
GbarD13G0026180 Alkaloid 7DLGT low borderline
GbarD13G0026190 Alkaloid 7DLGT low borderline
Gbarscaffold15178_obj0001130 Alkaloid 7DLGT medium pass
Gbarscaffold8868_obj_D060007590 Alkaloid 7DLGT low borderline
GbarA01G0003960 Alkaloid 7DLH medium borderline
GbarA01G0003980 Alkaloid 7DLH medium borderline