PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLH
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Gene Pathway Family Confidence Status
GhirA12G0025370.2 Alkaloid 7DLH medium borderline
GhirA13G0004050.1 Alkaloid 7DLH medium borderline
GhirA13G0004070.1 Alkaloid 7DLH medium borderline
GhirA13G0004090.1 Alkaloid 7DLH medium borderline
GhirA13G0006290.1 Alkaloid 7DLH medium borderline
GhirA13G0006330.1 Alkaloid 7DLH medium borderline
GhirA13G0006330.2 Alkaloid 7DLH medium borderline
GhirA13G0006330.3 Alkaloid 7DLH medium borderline
GhirD01G0004290.1 Alkaloid 7DLH medium borderline
GhirD01G0004300.1 Alkaloid 7DLH medium pass
GhirD01G0009450.1 Alkaloid 7DLH low borderline
GhirD01G0009450.3 Alkaloid 7DLH low borderline
GhirD01G0013290.1 Alkaloid 7DLH medium borderline
GhirD01G0024450.1 Alkaloid 7DLH medium borderline
GhirD02G0003330.1 Alkaloid 7DLH medium borderline
GhirD02G0003340.1 Alkaloid 7DLH medium borderline
GhirD02G0003350.1 Alkaloid 7DLH medium borderline
GhirD02G0003360.3 Alkaloid 7DLH medium borderline
GhirD02G0003370.1 Alkaloid 7DLH medium borderline
GhirD02G0003380.1 Alkaloid 7DLH medium borderline
GhirD02G0003400.1 Alkaloid 7DLH medium borderline
GhirD02G0003420.1 Alkaloid 7DLH medium borderline
GhirD02G0003430.1 Alkaloid 7DLH medium borderline
GhirD02G0003440.1 Alkaloid 7DLH medium borderline
GhirD02G0003440.2 Alkaloid 7DLH medium borderline
GhirD02G0003450.1 Alkaloid 7DLH medium borderline
GhirD02G0003460.1 Alkaloid 7DLH medium borderline
GhirD02G0003460.2 Alkaloid 7DLH medium borderline
GhirD02G0003470.1 Alkaloid 7DLH medium borderline
GhirD02G0003480.1 Alkaloid 7DLH medium borderline
GhirD02G0003480.2 Alkaloid 7DLH medium borderline
GhirD02G0003490.1 Alkaloid 7DLH medium borderline
GhirD02G0003510.1 Alkaloid 7DLH medium borderline
GhirD02G0003520.1 Alkaloid 7DLH medium borderline
GhirD02G0003530.1 Alkaloid 7DLH medium borderline
GhirD02G0003530.2 Alkaloid 7DLH medium borderline
GhirD02G0003540.1 Alkaloid 7DLH medium borderline
GhirD02G0003550.1 Alkaloid 7DLH medium borderline
GhirD02G0003560.1 Alkaloid 7DLH medium borderline
GhirD02G0003570.1 Alkaloid 7DLH medium borderline
GhirD03G0013770.1 Alkaloid 7DLH medium borderline
GhirD04G0012440.1 Alkaloid 7DLH medium borderline
GhirD04G0023100.1 Alkaloid 7DLH medium borderline
GhirD04G0023110.1 Alkaloid 7DLH medium borderline
GhirD05G0006940.1 Alkaloid 7DLH medium borderline
GhirD05G0021350.1 Alkaloid 7DLH medium borderline
GhirD05G0021360.1 Alkaloid 7DLH medium borderline
GhirD05G0021360.2 Alkaloid 7DLH medium borderline
GhirD05G0021360.3 Alkaloid 7DLH medium borderline
GhirD05G0034560.1 Alkaloid 7DLH low borderline