PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status
GhirD02G0002310.1 Alkaloid BBE medium borderline
GhirD02G0002320.1 Alkaloid BBE medium borderline
GhirD02G0002330.1 Alkaloid BBE medium borderline
GhirD02G0012630.1 Alkaloid BBE medium borderline
GhirD02G0012640.1 Alkaloid BBE medium borderline
GhirD04G0021270.1 Alkaloid BBE medium borderline
GhirD04G0021280.1 Alkaloid BBE medium borderline
GhirD05G0012240.1 Alkaloid BBE medium borderline
GhirD06G0014470.1 Alkaloid BBE medium borderline
GhirD06G0022410.1 Alkaloid BBE medium borderline
GhirD06G0022420.1 Alkaloid BBE medium borderline
GhirD06G0022430.1 Alkaloid BBE medium borderline
GhirD07G0007340.1 Alkaloid BBE medium borderline
GhirD08G0017540.1 Alkaloid BBE medium borderline
GhirD09G0015080.1 Alkaloid BBE low borderline
GhirD09G0020220.1 Alkaloid BBE medium borderline
GhirD09G0020240.1 Alkaloid BBE medium borderline
GhirD10G0000700.1 Alkaloid BBE medium borderline
GhirD10G0000710.1 Alkaloid BBE medium borderline
GhirD10G0000720.1 Alkaloid BBE medium borderline
GhirD10G0000730.1 Alkaloid BBE medium borderline
GhirD10G0000740.1 Alkaloid BBE medium borderline
GhirD10G0000750.1 Alkaloid BBE medium borderline
GhirD10G0000760.1 Alkaloid BBE medium borderline
GhirD10G0000780.1 Alkaloid BBE medium borderline
GhirD10G0000790.1 Alkaloid BBE medium borderline
GhirD10G0000800.1 Alkaloid BBE medium borderline
GhirD10G0009190.1 Alkaloid BBE medium borderline
GhirD10G0012700.1 Alkaloid BBE medium borderline
GhirD10G0013490.1 Alkaloid BBE medium borderline
GhirD10G0015560.1 Alkaloid BBE medium borderline
GhirD11G0001070.1 Alkaloid BBE medium borderline
GhirD12G0029390.1 Alkaloid BBE medium borderline
GhirD12G0029400.1 Alkaloid BBE medium borderline
GhirD12G0029410.1 Alkaloid BBE medium borderline
GhirD13G0002260.1 Alkaloid BBE medium borderline
GhirD13G0002260.2 Alkaloid BBE medium borderline