PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
GhirD07G0011630.1 Rosmarinic Acid C4H low borderline
GhirD07G0014060.1 Rosmarinic Acid C4H medium pass
GhirD07G0018740.1 Rosmarinic Acid C4H low borderline
GhirD07G0021720.1 Rosmarinic Acid C4H low borderline
GhirD07G0022160.1 Rosmarinic Acid C4H low borderline
GhirD07G0022490.1 Rosmarinic Acid C4H low borderline
GhirD07G0023040.1 Rosmarinic Acid C4H low borderline
GhirD07G0023050.1 Rosmarinic Acid C4H low borderline
GhirD07G0023060.1 Rosmarinic Acid C4H low borderline
GhirD07G0024600.1 Rosmarinic Acid C4H low borderline
GhirD08G0002130.1 Rosmarinic Acid C4H low borderline
GhirD08G0013370.1 Rosmarinic Acid C4H low borderline
GhirD08G0015600.1 Rosmarinic Acid C4H low borderline
GhirD08G0015600.2 Rosmarinic Acid C4H low borderline
GhirD08G0016130.1 Rosmarinic Acid C4H low borderline
GhirD08G0018450.1 Rosmarinic Acid C4H low borderline
GhirD08G0019460.1 Rosmarinic Acid C4H low borderline
GhirD08G0019480.1 Rosmarinic Acid C4H low borderline
GhirD08G0021010.1 Rosmarinic Acid C4H medium pass
GhirD08G0021240.1 Rosmarinic Acid C4H low borderline
GhirD08G0021250.1 Rosmarinic Acid C4H medium pass
GhirD08G0021260.1 Rosmarinic Acid C4H low borderline
GhirD08G0021270.1 Rosmarinic Acid C4H medium pass
GhirD08G0021320.1 Rosmarinic Acid C4H low borderline
GhirD08G0021330.1 Rosmarinic Acid C4H low borderline
GhirD08G0026550.1 Rosmarinic Acid C4H low borderline
GhirD08G0028050.1 Rosmarinic Acid C4H low borderline
GhirD08G0028800.1 Rosmarinic Acid C4H low borderline
GhirD09G0005760.1 Rosmarinic Acid C4H medium pass
GhirD09G0005770.1 Rosmarinic Acid C4H medium pass
GhirD09G0005790.1 Rosmarinic Acid C4H low borderline
GhirD09G0005800.1 Rosmarinic Acid C4H medium pass
GhirD09G0011200.1 Rosmarinic Acid C4H low borderline
GhirD09G0014370.1 Rosmarinic Acid C4H medium pass
GhirD09G0014380.1 Rosmarinic Acid C4H low borderline
GhirD09G0014390.1 Rosmarinic Acid C4H low borderline
GhirD09G0014400.1 Rosmarinic Acid C4H medium pass
GhirD09G0020330.1 Rosmarinic Acid C4H low borderline
GhirD09G0021640.1 Rosmarinic Acid C4H medium pass
GhirD09G0021640.2 Rosmarinic Acid C4H low borderline
GhirD09G0021650.1 Rosmarinic Acid C4H low borderline
GhirD09G0021660.1 Rosmarinic Acid C4H low borderline
GhirD09G0021670.1 Rosmarinic Acid C4H low borderline
GhirD09G0022170.1 Rosmarinic Acid C4H low borderline
GhirD09G0022250.1 Rosmarinic Acid C4H low borderline
GhirD09G0023040.1 Rosmarinic Acid C4H medium pass
GhirD09G0023050.1 Rosmarinic Acid C4H medium pass
GhirD10G0001510.1 Rosmarinic Acid C4H low borderline
GhirD10G0001560.1 Rosmarinic Acid C4H low borderline
GhirD10G0006230.1 Rosmarinic Acid C4H medium pass