PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
GhirD10G0006240.1 Rosmarinic Acid C4H low borderline
GhirD10G0010530.1 Rosmarinic Acid C4H medium pass
GhirD10G0016280.1 Rosmarinic Acid C4H low borderline
GhirD10G0016310.1 Rosmarinic Acid C4H low borderline
GhirD10G0021420.1 Rosmarinic Acid C4H medium pass
GhirD10G0021670.1 Rosmarinic Acid C4H low borderline
GhirD10G0021680.1 Rosmarinic Acid C4H low borderline
GhirD10G0023300.1 Rosmarinic Acid C4H low borderline
GhirD10G0023310.1 Rosmarinic Acid C4H low borderline
GhirD10G0023330.1 Rosmarinic Acid C4H low borderline
GhirD10G0023340.1 Rosmarinic Acid C4H medium pass
GhirD10G0023350.1 Rosmarinic Acid C4H low borderline
GhirD10G0023810.1 Rosmarinic Acid C4H low borderline
GhirD10G0023910.1 Rosmarinic Acid C4H low borderline
GhirD10G0024040.1 Rosmarinic Acid C4H medium pass
GhirD10G0024060.1 Rosmarinic Acid C4H medium pass
GhirD10G0024070.1 Rosmarinic Acid C4H medium pass
GhirD10G0024080.1 Rosmarinic Acid C4H medium pass
GhirD10G0024090.1 Rosmarinic Acid C4H medium pass
GhirD10G0026230.1 Rosmarinic Acid C4H low borderline
GhirD10G0027090.1 Rosmarinic Acid C4H medium pass
GhirD10G0028560.1 Rosmarinic Acid C4H medium pass
GhirD10G0028570.1 Rosmarinic Acid C4H low borderline
GhirD10G0028580.1 Rosmarinic Acid C4H low borderline
GhirD10G0029460.1 Rosmarinic Acid C4H low borderline
GhirD10G0029550.1 Rosmarinic Acid C4H low borderline
GhirD11G0000780.1 Rosmarinic Acid C4H low borderline
GhirD11G0000820.1 Rosmarinic Acid C4H low borderline
GhirD11G0004240.1 Rosmarinic Acid C4H medium pass
GhirD11G0005070.1 Rosmarinic Acid C4H medium pass
GhirD11G0009380.1 Rosmarinic Acid C4H low borderline
GhirD11G0009390.1 Rosmarinic Acid C4H low borderline
GhirD11G0009400.1 Rosmarinic Acid C4H low borderline
GhirD11G0011380.1 Rosmarinic Acid C4H low borderline
GhirD11G0015370.1 Rosmarinic Acid C4H medium pass
GhirD11G0015930.1 Rosmarinic Acid C4H medium pass
GhirD11G0015940.1 Rosmarinic Acid C4H low borderline
GhirD11G0016730.1 Rosmarinic Acid C4H low borderline
GhirD11G0018610.1 Rosmarinic Acid C4H low borderline
GhirD11G0020420.1 Rosmarinic Acid C4H medium pass
GhirD11G0020540.1 Rosmarinic Acid C4H low borderline
GhirD11G0021060.1 Rosmarinic Acid C4H low borderline
GhirD11G0021540.1 Rosmarinic Acid C4H low borderline
GhirD11G0022620.1 Rosmarinic Acid C4H medium pass
GhirD11G0024460.1 Rosmarinic Acid C4H low borderline
GhirD11G0024470.1 Rosmarinic Acid C4H low borderline
GhirD11G0026090.1 Rosmarinic Acid C4H medium pass
GhirD11G0036850.1 Rosmarinic Acid C4H low borderline
GhirD11G0036860.1 Rosmarinic Acid C4H low borderline
GhirD11G0036870.1 Rosmarinic Acid C4H low borderline