PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
GhirD11G0039770.1 Rosmarinic Acid C4H medium pass
GhirD12G0004720.1 Rosmarinic Acid C4H low borderline
GhirD12G0005890.1 Rosmarinic Acid C4H low borderline
GhirD12G0006210.1 Rosmarinic Acid C4H medium pass
GhirD12G0006840.1 Rosmarinic Acid C4H low borderline
GhirD12G0009780.1 Rosmarinic Acid C4H medium pass
GhirD12G0010250.1 Rosmarinic Acid C4H low borderline
GhirD12G0011480.1 Rosmarinic Acid C4H low borderline
GhirD12G0011480.2 Rosmarinic Acid C4H low borderline
GhirD12G0013150.1 Rosmarinic Acid C4H low borderline
GhirD12G0013320.1 Rosmarinic Acid C4H low borderline
GhirD12G0016230.1 Rosmarinic Acid C4H low borderline
GhirD12G0016930.1 Rosmarinic Acid C4H low borderline
GhirD12G0018550.1 Rosmarinic Acid C4H low borderline
GhirD12G0018980.1 Rosmarinic Acid C4H low borderline
GhirD12G0020970.1 Rosmarinic Acid C4H low borderline
GhirD12G0021430.1 Rosmarinic Acid C4H low borderline
GhirD12G0021440.1 Rosmarinic Acid C4H medium pass
GhirD12G0023160.1 Rosmarinic Acid C4H low borderline
GhirD12G0023540.1 Rosmarinic Acid C4H medium pass
GhirD12G0023550.1 Rosmarinic Acid C4H medium pass
GhirD12G0025280.1 Rosmarinic Acid C4H medium pass
GhirD12G0027340.1 Rosmarinic Acid C4H low borderline
GhirD12G0029190.1 Rosmarinic Acid C4H low borderline
GhirD12G0029950.1 Rosmarinic Acid C4H medium pass
GhirD12G0029960.1 Rosmarinic Acid C4H medium pass
GhirD12G0029970.1 Rosmarinic Acid C4H medium pass
GhirD12G0029980.1 Rosmarinic Acid C4H low borderline
GhirD13G0000120.1 Rosmarinic Acid C4H medium pass
GhirD13G0001460.1 Rosmarinic Acid C4H low borderline
GhirD13G0002650.1 Rosmarinic Acid C4H medium pass
GhirD13G0003410.1 Rosmarinic Acid C4H medium pass
GhirD13G0004260.1 Rosmarinic Acid C4H low borderline
GhirD13G0004270.1 Rosmarinic Acid C4H low borderline
GhirD13G0004280.1 Rosmarinic Acid C4H low borderline
GhirD13G0004280.3 Rosmarinic Acid C4H low borderline
GhirD13G0004280.5 Rosmarinic Acid C4H low borderline
GhirD13G0004290.1 Rosmarinic Acid C4H low borderline
GhirD13G0004290.2 Rosmarinic Acid C4H low borderline
GhirD13G0004300.1 Rosmarinic Acid C4H low borderline
GhirD13G0004310.1 Rosmarinic Acid C4H low borderline
GhirD13G0004320.1 Rosmarinic Acid C4H low borderline
GhirD13G0004320.2 Rosmarinic Acid C4H low borderline
GhirD13G0007370.1 Rosmarinic Acid C4H low borderline
GhirD13G0009100.1 Rosmarinic Acid C4H low borderline
GhirD13G0009670.1 Rosmarinic Acid C4H low borderline
GhirD13G0009900.1 Rosmarinic Acid C4H low borderline
GhirD13G0009930.1 Rosmarinic Acid C4H low borderline
GhirD13G0010390.1 Rosmarinic Acid C4H low borderline
GhirD13G0010680.1 Rosmarinic Acid C4H low borderline