PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
GhirD13G0009930.1 Flavonoid C4H medium borderline
GhirD13G0028310.1 Flavonoid C4H medium borderline
GhirA01G0004250.1 Rosmarinic Acid C4H low borderline
GhirA01G0004250.2 Rosmarinic Acid C4H low borderline
GhirA01G0004260.1 Rosmarinic Acid C4H low borderline
GhirA01G0004270.1 Rosmarinic Acid C4H low borderline
GhirA01G0004280.1 Rosmarinic Acid C4H low borderline
GhirA01G0004290.1 Rosmarinic Acid C4H low borderline
GhirA01G0006650.1 Rosmarinic Acid C4H medium pass
GhirA01G0006660.1 Rosmarinic Acid C4H medium pass
GhirA01G0006670.1 Rosmarinic Acid C4H low borderline
GhirA01G0008230.1 Rosmarinic Acid C4H low borderline
GhirA01G0009180.1 Rosmarinic Acid C4H low borderline
GhirA01G0009200.1 Rosmarinic Acid C4H medium pass
GhirA01G0009220.1 Rosmarinic Acid C4H low borderline
GhirA01G0009240.1 Rosmarinic Acid C4H low borderline
GhirA01G0009260.1 Rosmarinic Acid C4H low borderline
GhirA01G0009280.1 Rosmarinic Acid C4H medium pass
GhirA01G0009300.1 Rosmarinic Acid C4H low borderline
GhirA01G0009310.1 Rosmarinic Acid C4H medium pass
GhirA01G0009320.1 Rosmarinic Acid C4H low borderline
GhirA01G0009330.1 Rosmarinic Acid C4H low borderline
GhirA01G0009910.1 Rosmarinic Acid C4H low borderline
GhirA01G0012350.1 Rosmarinic Acid C4H low borderline
GhirA01G0021400.1 Rosmarinic Acid C4H medium pass
GhirA01G0021410.1 Rosmarinic Acid C4H medium pass
GhirA01G0021420.1 Rosmarinic Acid C4H medium pass
GhirA01G0021660.1 Rosmarinic Acid C4H medium pass
GhirA02G0000550.1 Rosmarinic Acid C4H medium pass
GhirA02G0002430.1 Rosmarinic Acid C4H low borderline
GhirA02G0002710.1 Rosmarinic Acid C4H low borderline
GhirA02G0002730.1 Rosmarinic Acid C4H low borderline
GhirA02G0002740.1 Rosmarinic Acid C4H low borderline
GhirA02G0002760.1 Rosmarinic Acid C4H low borderline
GhirA02G0002770.1 Rosmarinic Acid C4H low borderline
GhirA02G0002790.1 Rosmarinic Acid C4H low borderline
GhirA02G0002800.1 Rosmarinic Acid C4H low borderline
GhirA02G0002820.1 Rosmarinic Acid C4H low borderline
GhirA02G0002830.1 Rosmarinic Acid C4H low borderline
GhirA02G0002840.1 Rosmarinic Acid C4H low borderline
GhirA02G0002850.1 Rosmarinic Acid C4H low borderline
GhirA02G0002860.1 Rosmarinic Acid C4H low borderline
GhirA02G0002870.1 Rosmarinic Acid C4H low borderline
GhirA02G0002880.1 Rosmarinic Acid C4H low borderline
GhirA02G0002880.2 Rosmarinic Acid C4H low borderline
GhirA02G0002890.1 Rosmarinic Acid C4H low borderline
GhirA02G0002900.1 Rosmarinic Acid C4H low borderline
GhirA02G0002910.1 Rosmarinic Acid C4H low borderline
GhirA02G0007340.1 Rosmarinic Acid C4H low borderline
GhirA02G0007340.2 Rosmarinic Acid C4H low borderline