PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
GhirA02G0007340.3 Rosmarinic Acid C4H low borderline
GhirA02G0009370.1 Rosmarinic Acid C4H low borderline
GhirA02G0009400.1 Rosmarinic Acid C4H medium pass
GhirA02G0011040.1 Rosmarinic Acid C4H low borderline
GhirA02G0013120.1 Rosmarinic Acid C4H low borderline
GhirA02G0015370.1 Rosmarinic Acid C4H low borderline
GhirA02G0017450.1 Rosmarinic Acid C4H low borderline
GhirA02G0017740.1 Rosmarinic Acid C4H low borderline
GhirA02G0017770.1 Rosmarinic Acid C4H medium pass
GhirA02G0017780.1 Rosmarinic Acid C4H low borderline
GhirA02G0018890.1 Rosmarinic Acid C4H low borderline
GhirA02G0018890.2 Rosmarinic Acid C4H low borderline
GhirA02G0018890.3 Rosmarinic Acid C4H low borderline
GhirA03G0002140.1 Rosmarinic Acid C4H low borderline
GhirA03G0002150.1 Rosmarinic Acid C4H medium pass
GhirA03G0002160.1 Rosmarinic Acid C4H low borderline
GhirA03G0002170.1 Rosmarinic Acid C4H low borderline
GhirA03G0002180.1 Rosmarinic Acid C4H medium pass
GhirA03G0002190.1 Rosmarinic Acid C4H low borderline
GhirA03G0005890.1 Rosmarinic Acid C4H low borderline
GhirA03G0009390.1 Rosmarinic Acid C4H low borderline
GhirA03G0009420.1 Rosmarinic Acid C4H low borderline
GhirA03G0009430.1 Rosmarinic Acid C4H low borderline
GhirA03G0012130.1 Rosmarinic Acid C4H low borderline
GhirA03G0015010.1 Rosmarinic Acid C4H medium pass
GhirA04G0002010.1 Rosmarinic Acid C4H low borderline
GhirA04G0002020.1 Rosmarinic Acid C4H low borderline
GhirA04G0006310.1 Rosmarinic Acid C4H medium pass
GhirA04G0006320.1 Rosmarinic Acid C4H medium pass
GhirA04G0006330.1 Rosmarinic Acid C4H medium pass
GhirA04G0006340.1 Rosmarinic Acid C4H medium pass
GhirA04G0006360.1 Rosmarinic Acid C4H low borderline
GhirA04G0009160.1 Rosmarinic Acid C4H low borderline
GhirA04G0009170.1 Rosmarinic Acid C4H low borderline
GhirA04G0014650.1 Rosmarinic Acid C4H low borderline
GhirA04G0016590.1 Rosmarinic Acid C4H low borderline
GhirA04G0016600.1 Rosmarinic Acid C4H low borderline
GhirA04G0017670.1 Rosmarinic Acid C4H low borderline
GhirA04G0018340.1 Rosmarinic Acid C4H low borderline
GhirA04G0018350.1 Rosmarinic Acid C4H low borderline
GhirA05G0002050.1 Rosmarinic Acid C4H low borderline
GhirA05G0003460.1 Rosmarinic Acid C4H low borderline
GhirA05G0004340.1 Rosmarinic Acid C4H low borderline
GhirA05G0006620.1 Rosmarinic Acid C4H low borderline
GhirA05G0007140.1 Rosmarinic Acid C4H low borderline
GhirA05G0008720.1 Rosmarinic Acid C4H low borderline
GhirA05G0010230.1 Rosmarinic Acid C4H low borderline
GhirA05G0011510.1 Rosmarinic Acid C4H low borderline
GhirA05G0014310.1 Rosmarinic Acid C4H low borderline
GhirA05G0014310.2 Rosmarinic Acid C4H low borderline