PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
GhirA06G0020000.1 Rosmarinic Acid C4H low borderline
GhirA06G0022910.1 Rosmarinic Acid C4H low borderline
GhirA07G0000290.1 Rosmarinic Acid C4H low borderline
GhirA07G0004820.1 Rosmarinic Acid C4H low borderline
GhirA07G0006550.1 Rosmarinic Acid C4H low borderline
GhirA07G0009040.1 Rosmarinic Acid C4H low borderline
GhirA07G0009160.1 Rosmarinic Acid C4H low borderline
GhirA07G0009160.2 Rosmarinic Acid C4H low borderline
GhirA07G0010600.1 Rosmarinic Acid C4H low borderline
GhirA07G0010610.1 Rosmarinic Acid C4H low borderline
GhirA07G0013730.1 Rosmarinic Acid C4H medium pass
GhirA07G0013740.1 Rosmarinic Acid C4H medium pass
GhirA07G0017900.1 Rosmarinic Acid C4H low borderline
GhirA07G0020500.1 Rosmarinic Acid C4H low borderline
GhirA07G0020870.1 Rosmarinic Acid C4H low borderline
GhirA07G0021850.1 Rosmarinic Acid C4H low borderline
GhirA07G0021870.1 Rosmarinic Acid C4H low borderline
GhirA07G0021880.1 Rosmarinic Acid C4H low borderline
GhirA07G0023370.1 Rosmarinic Acid C4H low borderline
GhirA08G0012370.1 Rosmarinic Acid C4H low borderline
GhirA08G0014260.1 Rosmarinic Acid C4H low borderline
GhirA08G0014740.1 Rosmarinic Acid C4H low borderline
GhirA08G0014740.2 Rosmarinic Acid C4H low borderline
GhirA08G0016840.1 Rosmarinic Acid C4H low borderline
GhirA08G0017840.1 Rosmarinic Acid C4H low borderline
GhirA08G0017850.1 Rosmarinic Acid C4H low borderline
GhirA08G0017860.1 Rosmarinic Acid C4H low borderline
GhirA08G0017860.2 Rosmarinic Acid C4H low borderline
GhirA08G0017860.3 Rosmarinic Acid C4H low borderline
GhirA08G0017860.4 Rosmarinic Acid C4H low borderline
GhirA08G0017860.5 Rosmarinic Acid C4H low borderline
GhirA08G0019330.1 Rosmarinic Acid C4H medium pass
GhirA08G0019610.1 Rosmarinic Acid C4H low borderline
GhirA08G0019620.1 Rosmarinic Acid C4H low borderline
GhirA08G0019630.1 Rosmarinic Acid C4H medium pass
GhirA08G0019640.1 Rosmarinic Acid C4H medium pass
GhirA08G0019660.1 Rosmarinic Acid C4H medium pass
GhirA08G0024940.1 Rosmarinic Acid C4H low borderline
GhirA08G0026510.1 Rosmarinic Acid C4H low borderline
GhirA08G0026510.2 Rosmarinic Acid C4H low borderline
GhirA08G0027170.1 Rosmarinic Acid C4H low borderline
GhirA09G0001870.1 Rosmarinic Acid C4H medium pass
GhirA09G0004150.1 Rosmarinic Acid C4H low borderline
GhirA09G0004460.1 Rosmarinic Acid C4H low borderline
GhirA09G0005330.1 Rosmarinic Acid C4H medium pass
GhirA09G0005620.1 Rosmarinic Acid C4H medium pass
GhirA09G0010520.1 Rosmarinic Acid C4H low borderline
GhirA09G0014060.1 Rosmarinic Acid C4H medium pass
GhirA09G0014070.1 Rosmarinic Acid C4H low borderline
GhirA09G0014090.1 Rosmarinic Acid C4H low borderline