PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Protein/Isoform Record Pathway Family Confidence Status Best Target
GhirD11G0010280.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD11G0010290.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD11G0013940.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0016830.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0016840.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0032980.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0033000.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0033030.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0033040.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0033050.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0033070.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0033170.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0033190.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD11G0033200.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD13G0012020.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0012020.2 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0012020.3 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0012020.4 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0012020.5 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0012020.6 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0012930.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0014940.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD13G0017290.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD13G0017300.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD13G0017300.2 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GhirD13G0020880.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0020880.2 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0020880.3 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0020890.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GhirD13G0025020.1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH