PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
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Gene Pathway Family Confidence Status
GhirA03G0002070.1 Steroid CPD/CYP90A1 low borderline
GhirA03G0002070.2 Steroid CPD/CYP90A1 low borderline
GhirA04G0009160.1 Steroid CPD/CYP90A1 medium borderline
GhirA05G0020980.1 Steroid CPD/CYP90A1 low borderline
GhirA05G0036610.1 Steroid CPD/CYP90A1 low borderline
GhirA05G0042860.1 Steroid CPD/CYP90A1 low borderline
GhirA06G0001440.1 Steroid CPD/CYP90A1 low borderline
GhirA06G0001470.1 Steroid CPD/CYP90A1 low borderline
GhirA06G0001480.1 Steroid CPD/CYP90A1 low borderline
GhirA06G0001510.1 Steroid CPD/CYP90A1 low borderline
GhirA06G0001520.1 Steroid CPD/CYP90A1 low borderline
GhirA06G0021620.1 Steroid CPD/CYP90A1 low borderline
GhirA07G0017900.1 Steroid CPD/CYP90A1 low borderline
GhirA07G0023210.1 Steroid CPD/CYP90A1 low borderline
GhirA09G0021260.1 Steroid CPD/CYP90A1 medium borderline
GhirA09G0021280.1 Steroid CPD/CYP90A1 medium borderline
GhirA09G0021290.1 Steroid CPD/CYP90A1 medium borderline
GhirA09G0021750.1 Steroid CPD/CYP90A1 medium borderline
GhirA09G0021780.1 Steroid CPD/CYP90A1 medium borderline
GhirA09G0022710.1 Steroid CPD/CYP90A1 medium borderline
GhirA10G0021260.1 Steroid CPD/CYP90A1 medium borderline
GhirA10G0021510.1 Steroid CPD/CYP90A1 low borderline
GhirA11G0004310.1 Steroid CPD/CYP90A1 low borderline
GhirA11G0020430.1 Steroid CPD/CYP90A1 low borderline
GhirA11G0021490.1 Steroid CPD/CYP90A1 low borderline
GhirA11G0036310.1 Steroid CPD/CYP90A1 medium borderline
GhirA12G0006830.1 Steroid CPD/CYP90A1 medium borderline
GhirA12G0022660.1 Steroid CPD/CYP90A1 medium borderline
GhirD03G0018250.1 Steroid CPD/CYP90A1 medium borderline
GhirD03G0018260.1 Steroid CPD/CYP90A1 medium borderline
GhirD03G0018350.1 Steroid CPD/CYP90A1 low borderline
GhirD04G0009110.1 Steroid CPD/CYP90A1 low borderline
GhirD06G0001280.1 Steroid CPD/CYP90A1 low borderline
GhirD06G0001300.1 Steroid CPD/CYP90A1 low borderline
GhirD06G0001320.1 Steroid CPD/CYP90A1 low borderline
GhirD06G0001340.1 Steroid CPD/CYP90A1 low borderline
GhirD06G0001360.1 Steroid CPD/CYP90A1 low borderline
GhirD06G0001370.1 Steroid CPD/CYP90A1 low borderline
GhirD06G0001390.1 Steroid CPD/CYP90A1 low borderline
GhirD06G0001390.2 Steroid CPD/CYP90A1 low borderline
GhirD06G0001400.2 Steroid CPD/CYP90A1 low borderline
GhirD06G0023650.1 Steroid CPD/CYP90A1 low borderline
GhirD07G0006200.1 Steroid CPD/CYP90A1 medium borderline
GhirD07G0018740.1 Steroid CPD/CYP90A1 low borderline
GhirD08G0001470.1 Steroid CPD/CYP90A1 low borderline
GhirD09G0021660.1 Steroid CPD/CYP90A1 medium borderline
GhirD10G0023520.1 Steroid CPD/CYP90A1 low borderline
GhirD10G0027370.1 Steroid CPD/CYP90A1 medium borderline
GhirD11G0000780.1 Steroid CPD/CYP90A1 medium borderline
GhirD11G0004350.1 Steroid CPD/CYP90A1 low borderline