PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
GhirA11G0016850.2 Steroid CYP90D1 low borderline
GhirA11G0019990.1 Steroid CYP90D1 medium borderline
GhirA12G0002790.1 Steroid CYP90D1 low borderline
GhirA12G0003200.1 Steroid CYP90D1 low borderline
GhirA12G0010950.1 Steroid CYP90D1 low borderline
GhirA12G0016210.1 Steroid CYP90D1 low borderline
GhirA12G0021180.1 Steroid CYP90D1 low borderline
GhirA13G0002410.1 Steroid CYP90D1 low borderline
GhirA13G0004050.1 Steroid CYP90D1 low borderline
GhirA13G0004070.1 Steroid CYP90D1 low borderline
GhirA13G0004090.1 Steroid CYP90D1 low borderline
GhirA13G0006330.1 Steroid CYP90D1 low borderline
GhirA13G0006330.2 Steroid CYP90D1 low borderline
GhirA13G0006330.3 Steroid CYP90D1 low borderline
GhirA13G0010640.1 Steroid CYP90D1 low borderline
GhirA13G0013250.1 Steroid CYP90D1 medium borderline
GhirA13G0013370.1 Steroid CYP90D1 medium borderline
GhirA13G0017200.1 Steroid CYP90D1 medium borderline
GhirD01G0008460.1 Steroid CYP90D1 medium borderline
GhirD01G0009390.1 Steroid CYP90D1 low borderline
GhirD01G0013290.1 Steroid CYP90D1 low borderline
GhirD01G0023200.1 Steroid CYP90D1 low borderline
GhirD01G0023210.1 Steroid CYP90D1 low borderline
GhirD02G0003330.1 Steroid CYP90D1 low borderline
GhirD02G0003380.1 Steroid CYP90D1 low borderline
GhirD02G0003420.1 Steroid CYP90D1 low borderline
GhirD02G0003440.1 Steroid CYP90D1 low borderline
GhirD02G0003440.2 Steroid CYP90D1 low borderline
GhirD02G0003480.1 Steroid CYP90D1 low borderline
GhirD02G0003480.2 Steroid CYP90D1 low borderline
GhirD02G0003490.1 Steroid CYP90D1 low borderline
GhirD02G0003530.1 Steroid CYP90D1 low borderline
GhirD02G0003530.2 Steroid CYP90D1 low borderline
GhirD02G0003540.1 Steroid CYP90D1 low borderline
GhirD02G0003550.1 Steroid CYP90D1 low borderline
GhirD02G0003570.1 Steroid CYP90D1 low borderline
GhirD02G0008310.1 Steroid CYP90D1 medium borderline
GhirD02G0008310.2 Steroid CYP90D1 medium borderline
GhirD04G0002400.1 Steroid CYP90D1 low borderline
GhirD04G0002410.1 Steroid CYP90D1 low borderline
GhirD04G0002620.1 Steroid CYP90D1 low borderline
GhirD04G0012920.1 Steroid CYP90D1 low borderline
GhirD04G0021000.1 Steroid CYP90D1 low borderline
GhirD04G0021010.1 Steroid CYP90D1 low borderline
GhirD04G0021060.1 Steroid CYP90D1 low borderline
GhirD04G0021100.1 Steroid CYP90D1 low borderline
GhirD04G0023100.1 Steroid CYP90D1 low borderline
GhirD04G0023110.1 Steroid CYP90D1 low borderline
GhirD05G0002130.1 Steroid CYP90D1 low borderline
GhirD05G0006940.1 Steroid CYP90D1 low borderline