PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
GhirA08G0012490.1 Flavonoid F3H medium borderline
GhirA08G0012790.1 Flavonoid F3H medium borderline
GhirA08G0017930.1 Flavonoid F3H medium borderline
GhirA08G0018770.1 Flavonoid F3H medium pass
GhirA08G0018790.1 Flavonoid F3H low borderline
GhirA08G0018790.2 Flavonoid F3H low borderline
GhirA08G0018790.3 Flavonoid F3H medium borderline
GhirA08G0018800.1 Flavonoid F3H low borderline
GhirA08G0018800.2 Flavonoid F3H low borderline
GhirA08G0018810.1 Flavonoid F3H medium pass
GhirA08G0018810.2 Flavonoid F3H medium pass
GhirA08G0018810.3 Flavonoid F3H medium pass
GhirA08G0018810.4 Flavonoid F3H medium pass
GhirA08G0018810.5 Flavonoid F3H medium pass
GhirA08G0018810.6 Flavonoid F3H medium pass
GhirA08G0019710.1 Flavonoid F3H medium borderline
GhirA08G0021160.1 Flavonoid F3H medium borderline
GhirA08G0021170.1 Flavonoid F3H medium pass
GhirA08G0021180.1 Flavonoid F3H medium borderline
GhirA08G0021180.2 Flavonoid F3H medium borderline
GhirA08G0021180.3 Flavonoid F3H medium pass
GhirA08G0021180.4 Flavonoid F3H medium borderline
GhirA08G0021190.1 Flavonoid F3H medium borderline
GhirA08G0021210.1 Flavonoid F3H medium borderline
GhirA08G0025230.1 Flavonoid F3H medium borderline
GhirA08G0025240.1 Flavonoid F3H medium borderline
GhirA08G0025250.1 Flavonoid F3H medium borderline
GhirA08G0027260.1 Flavonoid F3H medium borderline
GhirA09G0000540.1 Flavonoid F3H medium borderline
GhirA09G0004280.1 Flavonoid F3H medium borderline
GhirA09G0006730.1 Flavonoid F3H medium borderline
GhirA09G0006750.1 Flavonoid F3H medium borderline
GhirA09G0009410.1 Flavonoid F3H low borderline
GhirA09G0009920.1 Flavonoid F3H low borderline
GhirA09G0012210.1 Flavonoid F3H medium borderline
GhirA09G0016030.1 Flavonoid F3H medium borderline
GhirA09G0018320.1 Flavonoid F3H medium borderline
GhirA09G0019700.1 Flavonoid F3H medium borderline
GhirA09G0025230.1 Flavonoid F3H medium borderline
GhirA09G0025250.1 Flavonoid F3H medium borderline
GhirA09G0025260.1 Flavonoid F3H medium borderline
GhirA09G0025270.1 Flavonoid F3H medium borderline
GhirA09G0025280.1 Flavonoid F3H medium borderline
GhirA09G0026880.1 Flavonoid F3H medium borderline
GhirA10G0000880.1 Flavonoid F3H low borderline
GhirA10G0001630.1 Flavonoid F3H medium borderline
GhirA10G0001950.1 Flavonoid F3H low borderline
GhirA10G0003610.1 Flavonoid F3H medium borderline
GhirA10G0003620.1 Flavonoid F3H medium borderline
GhirA10G0007130.1 Flavonoid F3H low borderline