PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
GhirA10G0008640.1 Flavonoid F3H low borderline
GhirA10G0008650.1 Flavonoid F3H low borderline
GhirA10G0008660.1 Flavonoid F3H low borderline
GhirA10G0008660.2 Flavonoid F3H low borderline
GhirA10G0008670.1 Flavonoid F3H low borderline
GhirA10G0010110.1 Flavonoid F3H low borderline
GhirA10G0010110.2 Flavonoid F3H low borderline
GhirA10G0010110.3 Flavonoid F3H low borderline
GhirA10G0010110.4 Flavonoid F3H low borderline
GhirA10G0010110.5 Flavonoid F3H low borderline
GhirA10G0010110.6 Flavonoid F3H low borderline
GhirA10G0010110.7 Flavonoid F3H low borderline
GhirA10G0017960.1 Flavonoid F3H medium borderline
GhirA10G0024630.1 Flavonoid F3H medium borderline
GhirA10G0026510.1 Flavonoid F3H medium borderline
GhirA11G0002360.1 Flavonoid F3H medium pass
GhirA11G0004700.1 Flavonoid F3H low borderline
GhirA11G0009260.1 Flavonoid F3H low borderline
GhirA11G0011310.1 Flavonoid F3H medium borderline
GhirA11G0011310.2 Flavonoid F3H medium borderline
GhirA11G0014250.1 Flavonoid F3H medium borderline
GhirA11G0014320.1 Flavonoid F3H medium borderline
GhirA11G0014320.2 Flavonoid F3H medium borderline
GhirA11G0016680.1 Flavonoid F3H medium borderline
GhirA11G0019010.1 Flavonoid F3H medium borderline
GhirA11G0026210.1 Flavonoid F3H low borderline
GhirA11G0026230.1 Flavonoid F3H low borderline
GhirA11G0026260.1 Flavonoid F3H low borderline
GhirA11G0032070.1 Flavonoid F3H medium borderline
GhirA12G0006500.1 Flavonoid F3H medium borderline
GhirA12G0010810.1 Flavonoid F3H medium borderline
GhirA12G0013590.1 Flavonoid F3H medium borderline
GhirA12G0023230.1 Flavonoid F3H medium borderline
GhirA12G0023240.1 Flavonoid F3H medium borderline
GhirA12G0023250.1 Flavonoid F3H medium borderline
GhirA12G0024660.1 Flavonoid F3H medium borderline
GhirA12G0027100.1 Flavonoid F3H medium borderline
GhirA13G0002720.1 Flavonoid F3H medium borderline
GhirA13G0005430.1 Flavonoid F3H medium borderline
GhirA13G0007450.1 Flavonoid F3H medium borderline
GhirA13G0007450.2 Flavonoid F3H medium borderline
GhirA13G0007460.1 Flavonoid F3H medium borderline
GhirA13G0011730.1 Flavonoid F3H medium borderline
GhirA13G0016870.1 Flavonoid F3H medium borderline
GhirA13G0016930.1 Flavonoid F3H medium borderline
GhirA13G0016940.1 Flavonoid F3H medium borderline
GhirA13G0016940.2 Flavonoid F3H medium borderline
GhirA13G0017070.1 Flavonoid F3H medium borderline
GhirA13G0017090.1 Flavonoid F3H medium borderline
GhirA13G0017270.1 Flavonoid F3H medium borderline