PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Protein/Isoform Record Pathway Family Confidence Status
GhirD08G0012870.1 Flavonoid F3H medium borderline
GhirD08G0013220.1 Flavonoid F3H medium borderline
GhirD08G0019550.1 Flavonoid F3H medium borderline
GhirD08G0020380.1 Flavonoid F3H low borderline
GhirD08G0020380.2 Flavonoid F3H low borderline
GhirD08G0020380.3 Flavonoid F3H low borderline
GhirD08G0020380.4 Flavonoid F3H low borderline
GhirD08G0020390.1 Flavonoid F3H medium borderline
GhirD08G0020400.1 Flavonoid F3H medium pass
GhirD08G0020400.2 Flavonoid F3H medium pass
GhirD08G0020400.3 Flavonoid F3H medium pass
GhirD08G0020400.4 Flavonoid F3H medium pass
GhirD08G0021380.1 Flavonoid F3H medium borderline
GhirD08G0022940.1 Flavonoid F3H medium borderline
GhirD08G0022950.1 Flavonoid F3H medium borderline
GhirD08G0022960.1 Flavonoid F3H medium borderline
GhirD08G0022970.1 Flavonoid F3H medium borderline
GhirD08G0026840.1 Flavonoid F3H medium borderline
GhirD08G0028870.1 Flavonoid F3H medium borderline
GhirD09G0000500.1 Flavonoid F3H medium borderline
GhirD09G0005300.1 Flavonoid F3H medium borderline
GhirD09G0007160.1 Flavonoid F3H medium borderline
GhirD09G0007180.1 Flavonoid F3H medium borderline
GhirD09G0007190.1 Flavonoid F3H medium borderline
GhirD09G0007210.1 Flavonoid F3H medium borderline
GhirD09G0007220.1 Flavonoid F3H medium borderline
GhirD09G0007230.1 Flavonoid F3H medium borderline
GhirD09G0010050.1 Flavonoid F3H low borderline
GhirD09G0010600.1 Flavonoid F3H low borderline
GhirD09G0012540.1 Flavonoid F3H medium borderline
GhirD09G0016280.1 Flavonoid F3H medium borderline
GhirD09G0018620.1 Flavonoid F3H medium borderline
GhirD09G0020140.1 Flavonoid F3H medium borderline
GhirD09G0025510.1 Flavonoid F3H medium pass
GhirD09G0025520.1 Flavonoid F3H medium borderline
GhirD09G0025530.1 Flavonoid F3H medium borderline
GhirD09G0025540.1 Flavonoid F3H medium borderline
GhirD09G0025550.1 Flavonoid F3H medium borderline
GhirD09G0025560.1 Flavonoid F3H medium borderline
GhirD09G0027190.1 Flavonoid F3H medium borderline
GhirD10G0000920.1 Flavonoid F3H low borderline
GhirD10G0001680.1 Flavonoid F3H medium borderline
GhirD10G0002020.1 Flavonoid F3H low borderline
GhirD10G0003700.1 Flavonoid F3H medium borderline
GhirD10G0003710.1 Flavonoid F3H medium borderline
GhirD10G0007380.1 Flavonoid F3H low borderline
GhirD10G0008380.1 Flavonoid F3H low borderline
GhirD10G0008390.1 Flavonoid F3H low borderline
GhirD10G0008400.1 Flavonoid F3H low borderline
GhirD10G0008410.1 Flavonoid F3H low borderline