PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Protein/Isoform Record Pathway Family Confidence Status
GhirD10G0011220.1 Flavonoid F3H low borderline
GhirD10G0011220.2 Flavonoid F3H low borderline
GhirD10G0011220.3 Flavonoid F3H low borderline
GhirD10G0019580.1 Flavonoid F3H medium borderline
GhirD10G0029210.1 Flavonoid F3H medium borderline
GhirD10G0029210.2 Flavonoid F3H medium borderline
GhirD10G0029650.1 Flavonoid F3H medium borderline
GhirD10G0029650.2 Flavonoid F3H medium borderline
GhirD11G0002400.1 Flavonoid F3H medium pass
GhirD11G0004720.1 Flavonoid F3H low borderline
GhirD11G0009500.1 Flavonoid F3H low borderline
GhirD11G0011640.1 Flavonoid F3H medium borderline
GhirD11G0014710.1 Flavonoid F3H medium borderline
GhirD11G0014780.1 Flavonoid F3H medium borderline
GhirD11G0017410.1 Flavonoid F3H medium borderline
GhirD11G0020070.1 Flavonoid F3H medium borderline
GhirD11G0028010.1 Flavonoid F3H low borderline
GhirD11G0028030.1 Flavonoid F3H low borderline
GhirD12G0006580.1 Flavonoid F3H medium borderline
GhirD12G0011330.1 Flavonoid F3H medium borderline
GhirD12G0014290.1 Flavonoid F3H medium borderline
GhirD12G0024150.1 Flavonoid F3H medium borderline
GhirD12G0024150.2 Flavonoid F3H medium borderline
GhirD12G0024170.1 Flavonoid F3H medium borderline
GhirD12G0027970.1 Flavonoid F3H medium borderline
GhirD13G0002990.1 Flavonoid F3H medium borderline
GhirD13G0005790.1 Flavonoid F3H medium borderline
GhirD13G0006150.1 Flavonoid F3H medium borderline
GhirD13G0006150.2 Flavonoid F3H medium borderline
GhirD13G0006160.1 Flavonoid F3H medium borderline
GhirD13G0006170.1 Flavonoid F3H medium borderline
GhirD13G0012680.1 Flavonoid F3H medium borderline
GhirD13G0018450.1 Flavonoid F3H medium borderline
GhirD13G0018520.1 Flavonoid F3H medium borderline
GhirD13G0018660.1 Flavonoid F3H medium borderline
GhirD13G0018670.1 Flavonoid F3H medium borderline
GhirD13G0018900.1 Flavonoid F3H medium borderline
GhirD13G0018910.1 Flavonoid F3H medium borderline
GhirD13G0018920.1 Flavonoid F3H medium borderline
GhirD13G0023810.1 Flavonoid F3H low borderline
GhirD13G0023810.2 Flavonoid F3H low borderline
GhirD13G0024720.1 Flavonoid F3H low borderline
GhirD13G0024730.1 Flavonoid F3H low borderline
GhirD13G0024740.1 Flavonoid F3H low borderline
GhirD13G0024750.1 Flavonoid F3H low borderline
GhirD13G0024770.1 Flavonoid F3H low borderline
GhirD13G0024780.1 Flavonoid F3H low borderline
GhirD13G0024790.1 Flavonoid F3H low borderline
GhirD13G0024820.1 Flavonoid F3H low borderline
GhirD13G0024830.1 Flavonoid F3H low borderline