PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
GhirA01G0006670.1 Alkaloid G8O/G8H medium pass
GhirA01G0009290.1 Alkaloid G8O/G8H medium borderline
GhirA01G0009910.1 Alkaloid G8O/G8H medium borderline
GhirA02G0013120.1 Alkaloid G8O/G8H medium borderline
GhirA03G0009420.1 Alkaloid G8O/G8H medium borderline
GhirA04G0006330.1 Alkaloid G8O/G8H medium borderline
GhirA04G0017670.1 Alkaloid G8O/G8H medium borderline
GhirA05G0020980.1 Alkaloid G8O/G8H medium borderline
GhirA05G0027960.1 Alkaloid G8O/G8H medium borderline
GhirA05G0029720.1 Alkaloid G8O/G8H medium borderline
GhirA06G0020000.1 Alkaloid G8O/G8H medium borderline
GhirA07G0013720.1 Alkaloid G8O/G8H medium borderline
GhirA07G0021850.1 Alkaloid G8O/G8H medium borderline
GhirA07G0021880.1 Alkaloid G8O/G8H medium borderline
GhirA08G0017850.1 Alkaloid G8O/G8H medium borderline
GhirA08G0019330.1 Alkaloid G8O/G8H medium borderline
GhirA08G0019610.1 Alkaloid G8O/G8H medium borderline
GhirA08G0019660.1 Alkaloid G8O/G8H medium borderline
GhirA09G0021250.1 Alkaloid G8O/G8H medium borderline
GhirA09G0021260.1 Alkaloid G8O/G8H medium borderline
GhirA10G0019870.1 Alkaloid G8O/G8H medium borderline
GhirA11G0033030.1 Alkaloid G8O/G8H medium borderline
GhirA11G0033950.1 Alkaloid G8O/G8H medium borderline
GhirA12G0008250.1 Alkaloid G8O/G8H low borderline
GhirA12G0020630.1 Alkaloid G8O/G8H medium borderline
GhirD01G0009510.1 Alkaloid G8O/G8H medium borderline
GhirD03G0006330.1 Alkaloid G8O/G8H medium borderline
GhirD03G0018250.1 Alkaloid G8O/G8H medium borderline
GhirD04G0022210.1 Alkaloid G8O/G8H medium borderline
GhirD05G0028800.1 Alkaloid G8O/G8H medium borderline
GhirD05G0030600.1 Alkaloid G8O/G8H medium borderline
GhirD05G0042640.1 Alkaloid G8O/G8H medium borderline
GhirD05G0042690.1 Alkaloid G8O/G8H medium borderline
GhirD06G0001350.1 Alkaloid G8O/G8H medium borderline
GhirD06G0001360.1 Alkaloid G8O/G8H medium borderline
GhirD06G0001380.1 Alkaloid G8O/G8H medium borderline
GhirD06G0018110.1 Alkaloid G8O/G8H medium borderline
GhirD06G0022170.1 Alkaloid G8O/G8H medium borderline
GhirD07G0023050.1 Alkaloid G8O/G8H medium borderline
GhirD08G0019460.1 Alkaloid G8O/G8H medium borderline
GhirD08G0021010.1 Alkaloid G8O/G8H medium borderline
GhirD08G0021320.1 Alkaloid G8O/G8H medium pass
GhirD08G0021330.1 Alkaloid G8O/G8H medium borderline
GhirD09G0021670.1 Alkaloid G8O/G8H medium pass
GhirD10G0021670.1 Alkaloid G8O/G8H medium borderline
GhirD10G0021680.1 Alkaloid G8O/G8H medium borderline
GhirD11G0024470.1 Alkaloid G8O/G8H medium borderline
GhirD11G0036850.1 Alkaloid G8O/G8H medium borderline
GhirD11G0036860.1 Alkaloid G8O/G8H medium borderline
GhirD11G0036870.1 Alkaloid G8O/G8H medium borderline