PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
Reset
Gene Pathway Family Confidence Status Best Target
GhirD10G0001940.1 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
GhirD10G0001950.1 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
GhirD10G0001970.1 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
GhirD11G0013940.1 Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
GhirD11G0016830.1 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
GhirD11G0016840.1 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
GhirD11G0032970.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0032980.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033000.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033020.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033020.2 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033030.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033040.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033050.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033060.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033070.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033080.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033150.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033170.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033190.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD11G0033200.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD13G0014940.1 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
GhirD13G0017290.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD13G0017300.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
GhirD13G0017300.2 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU