PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.85% Alkaloid pathway 23.06% Phenylpropanoid pathway 21.29% Flavonoid pathway 11.07% Rosmarinic acid pathway 7.93% Steroid pathway 6.79%
Family Distribution
C4H 6.81% BAHD 6.61% C3'H/CYP98A 5.75% IFS 3.94% 4CL 3.8% CYP76 3.59% POD 3.59% F3H 3.53%
Other Families 62.38%
More Families (98)
T3O 397 3.46% UGT 341 2.98% NMT 336 2.93% UFGT 335 2.92% 7DLGT 327 2.85% BR6OX2/CYP85A2 220 1.92% DWF4/CYP90B1 210 1.83% STR 199 1.74% F3'H/CYP75B 198 1.73% CODM/T6ODM 194 1.69% H6H 193 1.68% CAS 180 1.57% CAD 175 1.53% LAC 157 1.37% CYP71 156 1.36% CYP90D1 150 1.31% TRI/TRII 136 1.19% SMT1/SMT2/SMT3 135 1.18% 7DLH 129 1.13% TPS 129 1.13% GES 125 1.09% GS 110 0.96% CSE 110 0.96% HCT 106 0.92% RAS 96 0.84% IFR 95 0.83% COMT 91 0.79% BBE 87 0.76% T16H 84 0.73% NCS 80 0.7% IO 80 0.7% PYKS 73 0.64% ANR 69 0.6% CCR 66 0.58% COR 64 0.56% 16OMT 63 0.55% SGD 62 0.54% ROT3/CYP90C1 62 0.54% TAT 59 0.51% CPD/CYP90A1 58 0.51% PMT 57 0.5% FNS 57 0.5% F3'5'H/CYP75A 56 0.49% F5H/CYP84A 52 0.45% SLS 51 0.44% G8O/G8H 51 0.44% BR6OX1/CYP85A1 49 0.43% PAL 48 0.42% CYP51G1 43 0.38% CNMT 42 0.37% 8HGO 41 0.36% MVD 39 0.34% GGPPS 37 0.32% DFR 35 0.31% SQE 34 0.3% ANS/LDOX 33 0.29% CPR 27 0.24% CCoAOMT 25 0.22% LAMT 24 0.21% FPPS 24 0.21% MPO 23 0.2% CHS 22 0.19% SMO1/SMO2 19 0.17% ISY 18 0.16% SQS/FDFT1 18 0.16% HMGR 18 0.16% HMGS 17 0.15% AACT 17 0.15% TYDC_DDC 16 0.14% CYP719 16 0.14% CYP80B1 16 0.14% HPPR 16 0.14% MVK 15 0.13% ADC 13 0.11% CHI 13 0.11% DXS 13 0.11% DET2 11 0.1% MCT/IspD 11 0.1% DXR 11 0.1% TDC 10 0.09% FLS 7 0.06% MDS/IspF 7 0.06% HDR/IspH 7 0.06% HDS/IspG 7 0.06% CYP80F1 6 0.05% ODC 5 0.04% DWF5 5 0.04% HYD1 5 0.04% CPI1 4 0.03% XMT_MXMT_DXMT 3 0.03% FK 3 0.03% DWF1 3 0.03% 6OMT_4OMT_SOMT 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% IDI 2 0.02% PMK 2 0.02% GPPS 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status Best Target
GhirD12G0028450.3 Alkaloid PMT medium borderline PMT__00001__sp_Q42963_PMT1_TOBAC
GhirD13G0012740.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
GhirD13G0012890.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
GhirD13G0012900.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
GhirD13G0019220.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
GhirD13G0019250.1 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Ghirscaffold_14000000680.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ