Gossypium hirsutum (gossypium_hirsutum)
Imported from atlas release summary for Gossypium hirsutum.
4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
4579
Candidate Genes
C4H
6.81%
BAHD
6.61%
C3'H/CYP98A
5.75%
IFS
3.94%
4CL
3.8%
CYP76
3.59%
POD
3.59%
F3H
3.53%
Other Families
62.38%
More Families (98)
T3O
397
3.46%
UGT
341
2.98%
NMT
336
2.93%
UFGT
335
2.92%
7DLGT
327
2.85%
BR6OX2/CYP85A2
220
1.92%
DWF4/CYP90B1
210
1.83%
STR
199
1.74%
F3'H/CYP75B
198
1.73%
CODM/T6ODM
194
1.69%
H6H
193
1.68%
CAS
180
1.57%
CAD
175
1.53%
LAC
157
1.37%
CYP71
156
1.36%
CYP90D1
150
1.31%
TRI/TRII
136
1.19%
SMT1/SMT2/SMT3
135
1.18%
7DLH
129
1.13%
TPS
129
1.13%
GES
125
1.09%
GS
110
0.96%
CSE
110
0.96%
HCT
106
0.92%
RAS
96
0.84%
IFR
95
0.83%
COMT
91
0.79%
BBE
87
0.76%
T16H
84
0.73%
NCS
80
0.7%
IO
80
0.7%
PYKS
73
0.64%
ANR
69
0.6%
CCR
66
0.58%
COR
64
0.56%
16OMT
63
0.55%
SGD
62
0.54%
ROT3/CYP90C1
62
0.54%
TAT
59
0.51%
CPD/CYP90A1
58
0.51%
PMT
57
0.5%
FNS
57
0.5%
F3'5'H/CYP75A
56
0.49%
F5H/CYP84A
52
0.45%
SLS
51
0.44%
G8O/G8H
51
0.44%
BR6OX1/CYP85A1
49
0.43%
PAL
48
0.42%
CYP51G1
43
0.38%
CNMT
42
0.37%
8HGO
41
0.36%
MVD
39
0.34%
GGPPS
37
0.32%
DFR
35
0.31%
SQE
34
0.3%
ANS/LDOX
33
0.29%
CPR
27
0.24%
CCoAOMT
25
0.22%
LAMT
24
0.21%
FPPS
24
0.21%
MPO
23
0.2%
CHS
22
0.19%
SMO1/SMO2
19
0.17%
ISY
18
0.16%
SQS/FDFT1
18
0.16%
HMGR
18
0.16%
HMGS
17
0.15%
AACT
17
0.15%
TYDC_DDC
16
0.14%
CYP719
16
0.14%
CYP80B1
16
0.14%
HPPR
16
0.14%
MVK
15
0.13%
ADC
13
0.11%
CHI
13
0.11%
DXS
13
0.11%
DET2
11
0.1%
MCT/IspD
11
0.1%
DXR
11
0.1%
TDC
10
0.09%
FLS
7
0.06%
MDS/IspF
7
0.06%
HDR/IspH
7
0.06%
HDS/IspG
7
0.06%
CYP80F1
6
0.05%
ODC
5
0.04%
DWF5
5
0.04%
HYD1
5
0.04%
CPI1
4
0.03%
XMT_MXMT_DXMT
3
0.03%
FK
3
0.03%
DWF1
3
0.03%
6OMT_4OMT_SOMT
2
0.02%
DWF7
2
0.02%
CMK/IspE
2
0.02%
IDI
2
0.02%
PMK
2
0.02%
GPPS
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1367 | 21 | BAHD (612) | View species results |
| Alkaloid pathway | 1056 | 25 | NMT (183) | View species results |
| Phenylpropanoid pathway | 975 | 12 | POD (389) | View species results |
| Flavonoid pathway | 507 | 11 | UFGT (306) | View species results |
| Rosmarinic acid pathway | 363 | 7 | C4H (130) | View species results |
| Steroid pathway | 311 | 12 | CAS (159) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4387 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 960 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GhirA07G0006730.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| GhirA07G0006740.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA07G0007030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0011800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0011810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0011820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0012960.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA07G0014820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0014840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA08G0003370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA08G0009950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA08G0013160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA08G0016910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA09G0000250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA09G0008750.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA09G0011200.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA09G0012320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA09G0012620.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA09G0014710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA09G0015350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA09G0022680.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA09G0022720.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA09G0023230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA10G0007220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA10G0007220.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA10G0007270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA10G0007270.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA10G0008630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA10G0019480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA10G0022530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA10G0022530.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA11G0011500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA11G0011510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA11G0022060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA11G0022070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA11G0022620.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA11G0024200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA11G0031620.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA11G0031620.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA11G0031630.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA11G0031630.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA11G0031640.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA11G0033460.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| GhirA11G0036610.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA12G0017580.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA12G0018990.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA12G0022370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA12G0029690.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA13G0002240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA13G0010860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |