PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
GhirA01G0005670.1 Alkaloid T16H low borderline
GhirA01G0009280.1 Alkaloid T16H medium borderline
GhirA01G0009330.1 Alkaloid T16H medium borderline
GhirA02G0017780.1 Alkaloid T16H medium borderline
GhirA03G0002180.1 Alkaloid T16H medium borderline
GhirA03G0002500.3 Alkaloid T16H low borderline
GhirA03G0002510.1 Alkaloid T16H low borderline
GhirA03G0009390.1 Alkaloid T16H medium borderline
GhirA03G0012130.1 Alkaloid T16H low borderline
GhirA03G0017240.1 Alkaloid T16H medium borderline
GhirA03G0017240.2 Alkaloid T16H medium borderline
GhirA03G0021100.3 Alkaloid T16H medium borderline
GhirA04G0002010.1 Alkaloid T16H medium borderline
GhirA05G0014310.1 Alkaloid T16H medium borderline
GhirA05G0014310.2 Alkaloid T16H medium borderline
GhirA05G0019900.1 Alkaloid T16H medium borderline
GhirA05G0020960.1 Alkaloid T16H medium borderline
GhirA05G0021030.1 Alkaloid T16H medium borderline
GhirA05G0031360.1 Alkaloid T16H medium borderline
GhirA06G0001570.1 Alkaloid T16H medium borderline
GhirA06G0002390.1 Alkaloid T16H medium borderline
GhirA07G0010600.1 Alkaloid T16H medium borderline
GhirA07G0010610.1 Alkaloid T16H medium borderline
GhirA07G0013730.1 Alkaloid T16H medium borderline
GhirA07G0013740.1 Alkaloid T16H medium borderline
GhirA08G0017860.1 Alkaloid T16H medium borderline
GhirA08G0017860.2 Alkaloid T16H medium borderline
GhirA09G0021750.1 Alkaloid T16H low borderline
GhirA09G0021780.1 Alkaloid T16H low borderline
GhirA09G0021930.1 Alkaloid T16H low borderline
GhirA10G0019670.1 Alkaloid T16H medium borderline
GhirA10G0021760.1 Alkaloid T16H medium borderline
GhirA10G0026430.1 Alkaloid T16H medium borderline
GhirA10G0026430.2 Alkaloid T16H medium borderline
GhirA11G0020430.1 Alkaloid T16H medium borderline
GhirA11G0024430.1 Alkaloid T16H medium borderline
GhirA12G0003200.1 Alkaloid T16H low borderline
GhirA12G0003200.2 Alkaloid T16H low borderline
GhirA12G0009630.1 Alkaloid T16H medium borderline
GhirA12G0015600.1 Alkaloid T16H medium borderline
GhirA12G0016210.1 Alkaloid T16H medium borderline
GhirA12G0020650.1 Alkaloid T16H medium borderline
GhirA12G0021180.1 Alkaloid T16H medium borderline
GhirA12G0028260.1 Alkaloid T16H medium borderline
GhirA13G0026100.1 Alkaloid T16H medium borderline
GhirD01G0009440.1 Alkaloid T16H medium borderline
GhirD01G0009460.1 Alkaloid T16H medium borderline
GhirD01G0009490.1 Alkaloid T16H medium borderline
GhirD01G0009530.1 Alkaloid T16H medium borderline
GhirD01G0009540.1 Alkaloid T16H medium borderline