PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
GhirD01G0009540.2 Alkaloid T16H medium borderline
GhirD01G0018630.1 Alkaloid T16H medium borderline
GhirD02G0020880.1 Alkaloid T16H medium borderline
GhirD03G0002600.1 Alkaloid T16H medium borderline
GhirD03G0005660.1 Alkaloid T16H medium borderline
GhirD04G0021100.1 Alkaloid T16H medium borderline
GhirD04G0022210.2 Alkaloid T16H low borderline
GhirD05G0012560.1 Alkaloid T16H medium borderline
GhirD05G0014670.1 Alkaloid T16H medium borderline
GhirD05G0021720.1 Alkaloid T16H medium borderline
GhirD05G0022150.1 Alkaloid T16H medium borderline
GhirD05G0038240.1 Alkaloid T16H medium borderline
GhirD06G0001300.1 Alkaloid T16H medium borderline
GhirD06G0001460.1 Alkaloid T16H medium borderline
GhirD07G0010850.1 Alkaloid T16H medium borderline
GhirD07G0010860.1 Alkaloid T16H medium borderline
GhirD07G0010870.1 Alkaloid T16H medium borderline
GhirD09G0014390.1 Alkaloid T16H medium borderline
GhirD10G0000610.1 Alkaloid T16H medium borderline
GhirD10G0021420.1 Alkaloid T16H medium borderline
GhirD10G0023330.1 Alkaloid T16H medium borderline
GhirD10G0023810.1 Alkaloid T16H medium borderline
GhirD10G0029550.1 Alkaloid T16H medium borderline
GhirD11G0004240.1 Alkaloid T16H medium borderline
GhirD11G0026090.1 Alkaloid T16H medium borderline
GhirD12G0010250.1 Alkaloid T16H medium borderline
GhirD12G0013150.1 Alkaloid T16H medium borderline
GhirD12G0016320.1 Alkaloid T16H medium borderline
GhirD12G0016930.1 Alkaloid T16H medium borderline
GhirD12G0021440.1 Alkaloid T16H medium borderline
GhirD13G0007200.1 Alkaloid T16H low borderline
GhirD13G0016300.1 Alkaloid T16H medium borderline
GhirD13G0018850.1 Alkaloid T16H medium borderline
GhirD13G0028310.1 Alkaloid T16H medium borderline