PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
GhirA12G0002790.1 Alkaloid T3O low borderline
GhirA12G0006170.1 Alkaloid T3O medium borderline
GhirA12G0006830.1 Alkaloid T3O medium pass
GhirA12G0008260.1 Alkaloid T3O medium borderline
GhirA12G0012460.1 Alkaloid T3O medium borderline
GhirA12G0012620.1 Alkaloid T3O medium borderline
GhirA12G0017860.1 Alkaloid T3O medium borderline
GhirA12G0018200.1 Alkaloid T3O low borderline
GhirA12G0020200.1 Alkaloid T3O medium borderline
GhirA12G0020620.1 Alkaloid T3O medium borderline
GhirA12G0020640.1 Alkaloid T3O medium borderline
GhirA12G0022310.1 Alkaloid T3O medium pass
GhirA12G0022660.1 Alkaloid T3O medium borderline
GhirA12G0022670.1 Alkaloid T3O medium borderline
GhirA12G0024370.1 Alkaloid T3O medium borderline
GhirA12G0024860.1 Alkaloid T3O medium pass
GhirA12G0026470.1 Alkaloid T3O medium borderline
GhirA12G0029040.1 Alkaloid T3O medium borderline
GhirA13G0000130.1 Alkaloid T3O medium borderline
GhirA13G0001310.1 Alkaloid T3O medium pass
GhirA13G0001770.1 Alkaloid T3O medium pass
GhirA13G0002380.1 Alkaloid T3O medium borderline
GhirA13G0002390.1 Alkaloid T3O medium borderline
GhirA13G0002410.1 Alkaloid T3O medium borderline
GhirA13G0003150.1 Alkaloid T3O medium borderline
GhirA13G0004270.1 Alkaloid T3O medium pass
GhirA13G0004270.2 Alkaloid T3O medium pass
GhirA13G0006490.1 Alkaloid T3O medium pass
GhirA13G0008610.1 Alkaloid T3O medium pass
GhirA13G0008680.1 Alkaloid T3O medium borderline
GhirA13G0010940.1 Alkaloid T3O medium borderline
GhirA13G0013250.1 Alkaloid T3O medium pass
GhirA13G0013370.1 Alkaloid T3O medium pass
GhirA13G0013740.1 Alkaloid T3O medium borderline
GhirA13G0013800.1 Alkaloid T3O medium borderline
GhirA13G0014860.1 Alkaloid T3O medium borderline
GhirA13G0014960.1 Alkaloid T3O medium borderline
GhirA13G0017200.1 Alkaloid T3O medium pass
GhirA13G0022260.1 Alkaloid T3O medium borderline
GhirD01G0005730.1 Alkaloid T3O medium pass
GhirD01G0005750.1 Alkaloid T3O medium pass
GhirD01G0006850.1 Alkaloid T3O medium borderline
GhirD01G0006860.1 Alkaloid T3O medium borderline
GhirD01G0006870.1 Alkaloid T3O medium borderline
GhirD01G0008460.1 Alkaloid T3O medium pass
GhirD01G0009390.1 Alkaloid T3O medium borderline
GhirD01G0009400.1 Alkaloid T3O medium borderline
GhirD01G0009410.1 Alkaloid T3O medium borderline
GhirD01G0009430.1 Alkaloid T3O medium borderline
GhirD01G0009470.1 Alkaloid T3O medium borderline