PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
Reset
Protein/Isoform Record Pathway Family Confidence Status
GhirD05G0021640.1 Alkaloid T3O medium borderline
GhirD05G0021660.1 Alkaloid T3O medium borderline
GhirD05G0021670.1 Alkaloid T3O medium borderline
GhirD05G0021680.1 Alkaloid T3O medium borderline
GhirD05G0022660.1 Alkaloid T3O medium borderline
GhirD05G0028580.1 Alkaloid T3O medium borderline
GhirD05G0032300.1 Alkaloid T3O medium borderline
GhirD05G0034380.1 Alkaloid T3O medium borderline
GhirD05G0038220.1 Alkaloid T3O medium borderline
GhirD05G0038220.2 Alkaloid T3O medium borderline
GhirD05G0038280.1 Alkaloid T3O medium borderline
GhirD05G0038290.1 Alkaloid T3O medium borderline
GhirD05G0038300.1 Alkaloid T3O medium borderline
GhirD05G0042650.1 Alkaloid T3O medium borderline
GhirD06G0000620.1 Alkaloid T3O medium pass
GhirD06G0001220.1 Alkaloid T3O low borderline
GhirD06G0001280.1 Alkaloid T3O medium borderline
GhirD06G0001310.1 Alkaloid T3O medium borderline
GhirD06G0001340.1 Alkaloid T3O medium borderline
GhirD06G0001370.1 Alkaloid T3O medium borderline
GhirD06G0001410.1 Alkaloid T3O medium borderline
GhirD06G0002350.1 Alkaloid T3O medium borderline
GhirD06G0002350.2 Alkaloid T3O medium borderline
GhirD06G0008880.1 Alkaloid T3O medium borderline
GhirD06G0013420.1 Alkaloid T3O medium borderline
GhirD06G0016820.1 Alkaloid T3O low borderline
GhirD06G0019370.1 Alkaloid T3O medium pass
GhirD06G0019370.2 Alkaloid T3O medium pass
GhirD06G0020010.1 Alkaloid T3O medium pass
GhirD06G0021910.1 Alkaloid T3O low borderline
GhirD06G0021910.2 Alkaloid T3O low borderline
GhirD07G0006200.3 Alkaloid T3O medium pass
GhirD07G0006720.1 Alkaloid T3O medium borderline
GhirD07G0006750.1 Alkaloid T3O medium borderline
GhirD07G0006750.2 Alkaloid T3O medium borderline
GhirD07G0009300.1 Alkaloid T3O medium borderline
GhirD07G0009310.1 Alkaloid T3O medium borderline
GhirD07G0009440.1 Alkaloid T3O medium pass
GhirD07G0011630.1 Alkaloid T3O medium pass
GhirD07G0018740.1 Alkaloid T3O medium borderline
GhirD07G0021620.1 Alkaloid T3O medium pass
GhirD07G0024600.1 Alkaloid T3O medium borderline
GhirD07G0025130.1 Alkaloid T3O low borderline
GhirD07G0025140.1 Alkaloid T3O medium pass
GhirD08G0000920.1 Alkaloid T3O medium pass
GhirD08G0001470.1 Alkaloid T3O low borderline
GhirD08G0002130.1 Alkaloid T3O medium pass
GhirD08G0016130.1 Alkaloid T3O medium pass
GhirD08G0018450.1 Alkaloid T3O medium pass
GhirD08G0019480.1 Alkaloid T3O medium pass