PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
GhirD11G0015930.1 Alkaloid T3O medium borderline
GhirD11G0016730.1 Alkaloid T3O medium pass
GhirD11G0020420.1 Alkaloid T3O medium borderline
GhirD11G0020540.1 Alkaloid T3O medium pass
GhirD11G0021060.1 Alkaloid T3O medium pass
GhirD11G0021540.1 Alkaloid T3O medium borderline
GhirD11G0022620.1 Alkaloid T3O medium borderline
GhirD11G0024460.1 Alkaloid T3O medium borderline
GhirD11G0025540.1 Alkaloid T3O low borderline
GhirD12G0004720.1 Alkaloid T3O medium borderline
GhirD12G0006210.1 Alkaloid T3O medium borderline
GhirD12G0006840.1 Alkaloid T3O medium pass
GhirD12G0009780.1 Alkaloid T3O medium borderline
GhirD12G0013320.1 Alkaloid T3O medium borderline
GhirD12G0018550.1 Alkaloid T3O medium borderline
GhirD12G0018980.1 Alkaloid T3O low borderline
GhirD12G0020970.1 Alkaloid T3O medium borderline
GhirD12G0021430.1 Alkaloid T3O medium borderline
GhirD12G0023160.1 Alkaloid T3O medium pass
GhirD12G0023540.1 Alkaloid T3O medium borderline
GhirD12G0023550.1 Alkaloid T3O medium borderline
GhirD12G0025280.1 Alkaloid T3O medium borderline
GhirD12G0025790.1 Alkaloid T3O medium pass
GhirD12G0027340.1 Alkaloid T3O medium borderline
GhirD12G0029470.1 Alkaloid T3O medium pass
GhirD12G0029500.1 Alkaloid T3O low borderline
GhirD12G0029960.1 Alkaloid T3O medium borderline
GhirD12G0029980.1 Alkaloid T3O medium borderline
GhirD13G0000120.1 Alkaloid T3O medium borderline
GhirD13G0001460.1 Alkaloid T3O medium pass
GhirD13G0002650.1 Alkaloid T3O medium borderline
GhirD13G0003410.1 Alkaloid T3O medium borderline
GhirD13G0004590.1 Alkaloid T3O medium pass
GhirD13G0004590.2 Alkaloid T3O medium pass
GhirD13G0009100.1 Alkaloid T3O medium pass
GhirD13G0009670.1 Alkaloid T3O medium borderline
GhirD13G0009710.1 Alkaloid T3O medium pass
GhirD13G0014260.1 Alkaloid T3O medium pass
GhirD13G0014470.1 Alkaloid T3O medium pass
GhirD13G0016140.1 Alkaloid T3O medium borderline
GhirD13G0016280.1 Alkaloid T3O medium borderline
GhirD13G0016310.1 Alkaloid T3O medium borderline
GhirD13G0018790.1 Alkaloid T3O medium pass
GhirD13G0018860.1 Alkaloid T3O medium borderline
GhirD13G0024180.1 Alkaloid T3O medium borderline
Ghirscaffold_3860002850.1 Alkaloid T3O medium pass
Ghirscaffold_5210003460.1 Alkaloid T3O medium borderline