PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
GhirD06G0001270.1 Rosmarinic Acid C4H low borderline
GhirD06G0001280.1 Rosmarinic Acid C4H low borderline
GhirD06G0001300.1 Rosmarinic Acid C4H low borderline
GhirD06G0001310.1 Rosmarinic Acid C4H low borderline
GhirD06G0001320.1 Rosmarinic Acid C4H low borderline
GhirD06G0001330.1 Rosmarinic Acid C4H low borderline
GhirD06G0001340.1 Rosmarinic Acid C4H low borderline
GhirD06G0001350.1 Rosmarinic Acid C4H low borderline
GhirD06G0001360.1 Rosmarinic Acid C4H low borderline
GhirD06G0001370.1 Rosmarinic Acid C4H low borderline
GhirD06G0001380.1 Rosmarinic Acid C4H low borderline
GhirD06G0001390.1 Rosmarinic Acid C4H low borderline
GhirD06G0001390.2 Rosmarinic Acid C4H low borderline
GhirD06G0001400.1 Rosmarinic Acid C4H low borderline
GhirD06G0001400.2 Rosmarinic Acid C4H low borderline
GhirD06G0001410.1 Rosmarinic Acid C4H low borderline
GhirD06G0001460.1 Rosmarinic Acid C4H low borderline
GhirD06G0002350.1 Rosmarinic Acid C4H medium pass
GhirD06G0002350.2 Rosmarinic Acid C4H medium pass
GhirD06G0006570.1 Rosmarinic Acid C4H low borderline
GhirD06G0008880.1 Rosmarinic Acid C4H low borderline
GhirD06G0013420.1 Rosmarinic Acid C4H low borderline
GhirD06G0016820.1 Rosmarinic Acid C4H low borderline
GhirD06G0017750.1 Rosmarinic Acid C4H low borderline
GhirD06G0018110.1 Rosmarinic Acid C4H low borderline
GhirD06G0019370.1 Rosmarinic Acid C4H low borderline
GhirD06G0019370.2 Rosmarinic Acid C4H low borderline
GhirD06G0020010.1 Rosmarinic Acid C4H low borderline
GhirD06G0021910.1 Rosmarinic Acid C4H low borderline
GhirD06G0021910.2 Rosmarinic Acid C4H low borderline
GhirD06G0022170.1 Rosmarinic Acid C4H low borderline
GhirD06G0024930.1 Rosmarinic Acid C4H low borderline
GhirD07G0000350.1 Rosmarinic Acid C4H low borderline
GhirD07G0005000.1 Rosmarinic Acid C4H low borderline
GhirD07G0006720.1 Rosmarinic Acid C4H low borderline
GhirD07G0006750.1 Rosmarinic Acid C4H low borderline
GhirD07G0006750.2 Rosmarinic Acid C4H low borderline
GhirD07G0009300.1 Rosmarinic Acid C4H medium pass
GhirD07G0009310.1 Rosmarinic Acid C4H low borderline
GhirD07G0009440.1 Rosmarinic Acid C4H low borderline
GhirD07G0010850.1 Rosmarinic Acid C4H low borderline
GhirD07G0010860.1 Rosmarinic Acid C4H low borderline
GhirD07G0010870.1 Rosmarinic Acid C4H low borderline
GhirD07G0011630.1 Rosmarinic Acid C4H low borderline
GhirD07G0014060.1 Rosmarinic Acid C4H medium pass
GhirD07G0018740.1 Rosmarinic Acid C4H low borderline
GhirD07G0021720.1 Rosmarinic Acid C4H low borderline
GhirD07G0022160.1 Rosmarinic Acid C4H low borderline
GhirD07G0022490.1 Rosmarinic Acid C4H low borderline
GhirD07G0023040.1 Rosmarinic Acid C4H low borderline