PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD04G0008060.1 Rosmarinic Acid TAT low borderline
GhirD04G0015650.1 Rosmarinic Acid TAT low borderline
GhirD04G0015650.2 Rosmarinic Acid TAT low borderline
GhirD04G0022030.1 Rosmarinic Acid TAT medium pass
GhirD05G0013780.1 Rosmarinic Acid TAT medium pass
GhirD07G0011400.1 Rosmarinic Acid TAT medium pass
GhirD08G0019490.1 Rosmarinic Acid TAT medium pass
GhirD10G0021040.1 Rosmarinic Acid TAT medium pass
GhirD10G0024420.1 Rosmarinic Acid TAT low borderline
GhirD10G0027650.1 Rosmarinic Acid TAT low borderline
GhirD10G0027660.1 Rosmarinic Acid TAT low borderline
GhirD11G0001170.1 Rosmarinic Acid TAT low borderline
GhirD11G0031620.1 Rosmarinic Acid TAT medium pass
GhirD12G0015880.1 Rosmarinic Acid TAT low borderline
GhirD12G0017070.1 Rosmarinic Acid TAT medium pass
GhirD12G0023080.1 Rosmarinic Acid TAT low borderline
GhirD13G0007860.1 Rosmarinic Acid TAT medium pass
GhirD13G0007860.2 Rosmarinic Acid TAT medium pass
GhirD13G0007860.3 Rosmarinic Acid TAT medium pass
GhirD13G0007860.4 Rosmarinic Acid TAT medium pass
GhirD13G0007860.5 Rosmarinic Acid TAT medium pass
GhirD13G0007860.6 Rosmarinic Acid TAT medium pass
GhirD13G0017950.1 Rosmarinic Acid TAT medium pass
GhirA03G0021100.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA03G0021100.2 Steroid BR6OX1/CYP85A1 medium borderline
GhirA03G0021100.3 Steroid BR6OX1/CYP85A1 medium borderline
GhirA04G0002020.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA05G0021030.1 Steroid BR6OX1/CYP85A1 low borderline
GhirA05G0021460.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA06G0000830.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA06G0000830.2 Steroid BR6OX1/CYP85A1 medium borderline
GhirA06G0001570.1 Steroid BR6OX1/CYP85A1 low borderline
GhirA06G0012220.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA06G0016390.1 Steroid BR6OX1/CYP85A1 low borderline
GhirA07G0006030.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA08G0016840.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA08G0017840.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA09G0021820.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA11G0000860.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA11G0000870.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA12G0022310.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA12G0024370.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA12G0029050.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA12G0029080.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA13G0000660.1 Steroid BR6OX1/CYP85A1 low borderline
GhirA13G0000680.1 Steroid BR6OX1/CYP85A1 low borderline
GhirA13G0004270.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA13G0004270.2 Steroid BR6OX1/CYP85A1 medium borderline
GhirA13G0008620.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA13G0013510.1 Steroid BR6OX1/CYP85A1 medium borderline