PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD05G0004580.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD05G0021720.1 Steroid BR6OX1/CYP85A1 low borderline
GhirD05G0022150.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD06G0000620.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD06G0001330.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD06G0001460.1 Steroid BR6OX1/CYP85A1 low borderline
GhirD06G0013420.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD08G0018450.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD09G0021670.1 Steroid BR6OX1/CYP85A1 low borderline
GhirD10G0026230.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD12G0023160.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD12G0025280.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD12G0029960.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD12G0029970.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD13G0000630.1 Steroid BR6OX1/CYP85A1 low borderline
GhirD13G0000640.1 Steroid BR6OX1/CYP85A1 low borderline
GhirD13G0000650.1 Steroid BR6OX1/CYP85A1 low borderline
GhirD13G0000660.1 Steroid BR6OX1/CYP85A1 low borderline
GhirD13G0000720.1 Steroid BR6OX1/CYP85A1 low borderline
GhirD13G0004590.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirD13G0004590.2 Steroid BR6OX1/CYP85A1 medium borderline
Ghirscaffold_3860002850.1 Steroid BR6OX1/CYP85A1 medium borderline
GhirA01G0004250.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0004250.2 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0004260.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0004270.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0004280.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0004290.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0006650.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0006660.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0009240.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0009910.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0012350.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0021410.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA01G0022750.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0002730.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0002760.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0002770.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0002790.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0002820.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0002840.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0002870.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0002900.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0009370.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0011040.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA02G0015370.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA03G0002160.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA03G0002190.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA03G0006500.1 Steroid BR6OX2/CYP85A2 low borderline
GhirA04G0006320.1 Steroid BR6OX2/CYP85A2 low borderline