PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD01G0003170.1 Flavonoid F3H medium borderline
GhirD01G0003670.1 Flavonoid F3H medium borderline
GhirD01G0003680.1 Flavonoid F3H medium borderline
GhirD01G0003690.1 Flavonoid F3H medium borderline
GhirD01G0003720.1 Flavonoid F3H medium borderline
GhirD01G0004490.1 Flavonoid F3H medium borderline
GhirD01G0004500.1 Flavonoid F3H medium borderline
GhirD01G0006200.1 Flavonoid F3H medium borderline
GhirD01G0006200.2 Flavonoid F3H medium borderline
GhirD01G0006200.3 Flavonoid F3H medium borderline
GhirD01G0015840.1 Flavonoid F3H medium borderline
GhirD01G0015870.1 Flavonoid F3H medium borderline
GhirD01G0025390.1 Flavonoid F3H medium borderline
GhirD01G0026660.1 Flavonoid F3H medium borderline
GhirD02G0005160.1 Flavonoid F3H low borderline
GhirD02G0005170.1 Flavonoid F3H medium borderline
GhirD02G0005740.1 Flavonoid F3H medium borderline
GhirD02G0005760.1 Flavonoid F3H medium borderline
GhirD02G0009180.1 Flavonoid F3H medium borderline
GhirD02G0009220.1 Flavonoid F3H medium borderline
GhirD02G0015910.1 Flavonoid F3H medium borderline
GhirD02G0016670.1 Flavonoid F3H medium borderline
GhirD03G0002790.1 Flavonoid F3H low borderline
GhirD03G0007110.1 Flavonoid F3H low borderline
GhirD03G0007150.1 Flavonoid F3H low borderline
GhirD03G0007720.1 Flavonoid F3H medium borderline
GhirD03G0008660.1 Flavonoid F3H medium pass
GhirD03G0008690.1 Flavonoid F3H low borderline
GhirD04G0002850.1 Flavonoid F3H medium borderline
GhirD04G0002860.1 Flavonoid F3H medium borderline
GhirD04G0007690.1 Flavonoid F3H medium borderline
GhirD04G0007710.1 Flavonoid F3H medium borderline
GhirD04G0007720.1 Flavonoid F3H medium borderline
GhirD04G0008180.1 Flavonoid F3H medium borderline
GhirD04G0013140.1 Flavonoid F3H medium borderline
GhirD04G0014930.1 Flavonoid F3H medium borderline
GhirD05G0009500.1 Flavonoid F3H medium borderline
GhirD05G0014380.1 Flavonoid F3H low borderline
GhirD05G0018470.1 Flavonoid F3H medium borderline
GhirD05G0019080.1 Flavonoid F3H medium borderline
GhirD05G0024310.1 Flavonoid F3H medium borderline
GhirD05G0025460.1 Flavonoid F3H medium borderline
GhirD05G0026100.1 Flavonoid F3H medium pass
GhirD05G0041950.1 Flavonoid F3H low borderline
GhirD05G0041950.2 Flavonoid F3H low borderline
GhirD05G0041970.1 Flavonoid F3H low borderline
GhirD05G0041980.1 Flavonoid F3H low borderline
GhirD06G0007600.1 Flavonoid F3H low borderline
GhirD06G0007600.2 Flavonoid F3H low borderline
GhirD06G0007600.3 Flavonoid F3H low borderline