PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
GhirD04G0015150.2 Alkaloid COR medium pass
GhirD04G0015150.3 Alkaloid COR medium pass
GhirD04G0015150.4 Alkaloid COR medium pass
GhirD04G0019910.1 Alkaloid COR medium pass
GhirD04G0021900.1 Alkaloid COR medium pass
GhirD04G0021900.2 Alkaloid COR medium pass
GhirD09G0017320.1 Alkaloid COR medium pass
GhirD09G0017330.1 Alkaloid COR medium pass
GhirD11G0040340.1 Alkaloid COR medium pass
GhirD12G0018000.1 Alkaloid COR medium pass
GhirD13G0000830.1 Alkaloid COR medium pass
GhirD13G0000850.1 Alkaloid COR medium pass
GhirA03G0013270.1 Alkaloid CYP719 medium borderline
GhirA03G0013270.2 Alkaloid CYP719 medium borderline
GhirA06G0016390.1 Alkaloid CYP719 medium borderline
GhirA07G0021090.1 Alkaloid CYP719 low borderline
GhirA08G0014740.1 Alkaloid CYP719 medium borderline
GhirA08G0014740.2 Alkaloid CYP719 medium borderline
GhirA08G0024940.1 Alkaloid CYP719 medium borderline
GhirA10G0001510.1 Alkaloid CYP719 medium borderline
GhirA11G0016830.1 Alkaloid CYP719 low borderline
GhirA11G0033020.1 Alkaloid CYP719 medium borderline
GhirD07G0022330.1 Alkaloid CYP719 low borderline
GhirD08G0026550.1 Alkaloid CYP719 medium borderline
GhirD10G0001560.1 Alkaloid CYP719 medium borderline
GhirD11G0017570.1 Alkaloid CYP719 low borderline
GhirD13G0004340.1 Alkaloid CYP719 low borderline
GhirD13G0010680.1 Alkaloid CYP719 medium borderline
GhirA04G0002020.1 Alkaloid CYP80B1 medium borderline
GhirA06G0001450.1 Alkaloid CYP80B1 medium borderline
GhirA06G0001450.2 Alkaloid CYP80B1 medium borderline
GhirA06G0001450.3 Alkaloid CYP80B1 medium borderline
GhirA07G0021870.1 Alkaloid CYP80B1 medium borderline
GhirA10G0006020.1 Alkaloid CYP80B1 medium borderline
GhirA11G0000850.1 Alkaloid CYP80B1 medium borderline
GhirA11G0000860.1 Alkaloid CYP80B1 medium borderline
GhirD06G0001290.1 Alkaloid CYP80B1 medium pass
GhirD06G0001400.1 Alkaloid CYP80B1 medium borderline
GhirD06G0001400.2 Alkaloid CYP80B1 medium borderline
GhirD07G0023040.1 Alkaloid CYP80B1 medium borderline
GhirD07G0023060.1 Alkaloid CYP80B1 medium borderline
GhirD11G0000780.1 Alkaloid CYP80B1 medium borderline
GhirD11G0015940.1 Alkaloid CYP80B1 medium borderline
GhirD13G0010690.1 Alkaloid CYP80B1 medium borderline
GhirA01G0022060.1 Alkaloid CYP80F1 low borderline
GhirA03G0023300.1 Alkaloid CYP80F1 low borderline
GhirD01G0023800.1 Alkaloid CYP80F1 low borderline
GhirD02G0027270.1 Alkaloid CYP80F1 low borderline
GhirD10G0001990.1 Alkaloid CYP80F1 low borderline
GhirD11G0000790.1 Alkaloid CYP80F1 medium borderline