PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD10G0013730.1 Rosmarinic Acid RAS medium pass
GhirD10G0013760.1 Rosmarinic Acid RAS medium pass
GhirD10G0029900.1 Rosmarinic Acid RAS low borderline
GhirD11G0011920.1 Rosmarinic Acid RAS low borderline
GhirD12G0003870.1 Rosmarinic Acid RAS low borderline
GhirD12G0031270.1 Rosmarinic Acid RAS low borderline
GhirD13G0001840.1 Rosmarinic Acid RAS low borderline
GhirD13G0012740.1 Rosmarinic Acid RAS medium pass
GhirD13G0012890.1 Rosmarinic Acid RAS medium pass
GhirD13G0012900.1 Rosmarinic Acid RAS medium pass
Ghirscaffold_14000000680.1 Rosmarinic Acid RAS medium pass
GhirA01G0011140.1 Rosmarinic Acid TAT medium pass
GhirA01G0011150.1 Rosmarinic Acid TAT medium pass
GhirA03G0014730.1 Rosmarinic Acid TAT medium pass
GhirA03G0014740.1 Rosmarinic Acid TAT medium pass
GhirA03G0017460.1 Rosmarinic Acid TAT medium pass
GhirA03G0017470.1 Rosmarinic Acid TAT medium pass
GhirA03G0017470.2 Rosmarinic Acid TAT medium pass
GhirA03G0017470.3 Rosmarinic Acid TAT medium pass
GhirA03G0017470.4 Rosmarinic Acid TAT medium pass
GhirA04G0011480.1 Rosmarinic Acid TAT low borderline
GhirA04G0017530.1 Rosmarinic Acid TAT medium pass
GhirA05G0013420.1 Rosmarinic Acid TAT medium pass
GhirA05G0013420.2 Rosmarinic Acid TAT medium pass
GhirA05G0013420.3 Rosmarinic Acid TAT medium pass
GhirA05G0035550.1 Rosmarinic Acid TAT low borderline
GhirA07G0011100.1 Rosmarinic Acid TAT medium pass
GhirA08G0017870.1 Rosmarinic Acid TAT medium pass
GhirA10G0019320.1 Rosmarinic Acid TAT medium pass
GhirA10G0022270.1 Rosmarinic Acid TAT low borderline
GhirA10G0025990.1 Rosmarinic Acid TAT low borderline
GhirA10G0026000.1 Rosmarinic Acid TAT low borderline
GhirA11G0001190.1 Rosmarinic Acid TAT low borderline
GhirA11G0029580.1 Rosmarinic Acid TAT medium pass
GhirA12G0016340.1 Rosmarinic Acid TAT medium pass
GhirA12G0022230.1 Rosmarinic Acid TAT low borderline
GhirA13G0005890.1 Rosmarinic Acid TAT medium pass
GhirA13G0016390.1 Rosmarinic Acid TAT medium pass
GhirD01G0011560.1 Rosmarinic Acid TAT medium pass
GhirD01G0011580.1 Rosmarinic Acid TAT medium pass
GhirD01G0011590.1 Rosmarinic Acid TAT medium pass
GhirD02G0018240.1 Rosmarinic Acid TAT medium pass
GhirD02G0018270.1 Rosmarinic Acid TAT medium pass
GhirD02G0021180.1 Rosmarinic Acid TAT medium pass
GhirD02G0021190.1 Rosmarinic Acid TAT medium pass
GhirD02G0021200.1 Rosmarinic Acid TAT medium pass
GhirD02G0021210.1 Rosmarinic Acid TAT medium pass
GhirD04G0008060.1 Rosmarinic Acid TAT low borderline
GhirD04G0015650.1 Rosmarinic Acid TAT low borderline
GhirD04G0015650.2 Rosmarinic Acid TAT low borderline