PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD13G0006150.1 Flavonoid F3H medium borderline
GhirD13G0006150.2 Flavonoid F3H medium borderline
GhirD13G0006160.1 Flavonoid F3H medium borderline
GhirD13G0006170.1 Flavonoid F3H medium borderline
GhirD13G0012680.1 Flavonoid F3H medium borderline
GhirD13G0018450.1 Flavonoid F3H medium borderline
GhirD13G0018520.1 Flavonoid F3H medium borderline
GhirD13G0018660.1 Flavonoid F3H medium borderline
GhirD13G0018670.1 Flavonoid F3H medium borderline
GhirD13G0018900.1 Flavonoid F3H medium borderline
GhirD13G0018910.1 Flavonoid F3H medium borderline
GhirD13G0018920.1 Flavonoid F3H medium borderline
GhirD13G0023810.1 Flavonoid F3H low borderline
GhirD13G0023810.2 Flavonoid F3H low borderline
GhirD13G0024720.1 Flavonoid F3H low borderline
GhirD13G0024730.1 Flavonoid F3H low borderline
GhirD13G0024740.1 Flavonoid F3H low borderline
GhirD13G0024750.1 Flavonoid F3H low borderline
GhirD13G0024770.1 Flavonoid F3H low borderline
GhirD13G0024780.1 Flavonoid F3H low borderline
GhirD13G0024790.1 Flavonoid F3H low borderline
GhirD13G0024820.1 Flavonoid F3H low borderline
GhirD13G0024830.1 Flavonoid F3H low borderline
GhirD13G0024840.1 Flavonoid F3H low borderline
GhirD13G0024860.1 Flavonoid F3H low borderline
GhirD13G0024880.1 Flavonoid F3H medium pass
GhirD13G0025610.1 Flavonoid F3H medium borderline
Ghirscaffold_1400000670.1 Flavonoid F3H medium pass
GhirA01G0023250.1 Flavonoid FLS low borderline
GhirA01G0023260.1 Flavonoid FLS low borderline
GhirA07G0019640.1 Flavonoid FLS low borderline
GhirD01G0015830.1 Flavonoid FLS medium borderline
GhirD01G0024900.1 Flavonoid FLS low borderline
GhirD07G0002320.1 Flavonoid FLS low borderline
GhirD12G0030020.1 Flavonoid FLS low borderline
GhirA01G0006670.1 Flavonoid FNS medium borderline
GhirA01G0009290.1 Flavonoid FNS medium borderline
GhirA01G0009910.1 Flavonoid FNS medium borderline
GhirA02G0011040.1 Flavonoid FNS medium borderline
GhirA03G0002180.1 Flavonoid FNS medium borderline
GhirA03G0012130.1 Flavonoid FNS medium borderline
GhirA03G0013270.1 Flavonoid FNS low borderline
GhirA03G0013270.2 Flavonoid FNS low borderline
GhirA03G0017240.1 Flavonoid FNS medium borderline
GhirA03G0017240.2 Flavonoid FNS medium borderline
GhirA04G0006330.1 Flavonoid FNS medium borderline
GhirA05G0004340.1 Flavonoid FNS medium borderline
GhirA05G0021920.1 Flavonoid FNS medium borderline
GhirA05G0029720.1 Flavonoid FNS medium borderline
GhirA06G0011030.2 Flavonoid FNS low borderline