PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD07G0005310.2 Alkaloid GS low borderline
GhirD07G0005320.1 Alkaloid GS low borderline
GhirD07G0010770.1 Alkaloid GS low borderline
GhirD07G0010780.1 Alkaloid GS low borderline
GhirD07G0010790.1 Alkaloid GS low borderline
GhirD07G0010800.1 Alkaloid GS low borderline
GhirD07G0010810.1 Alkaloid GS low borderline
GhirD07G0023690.1 Alkaloid GS low borderline
GhirD07G0023700.1 Alkaloid GS low borderline
GhirD07G0023710.1 Alkaloid GS low borderline
GhirD07G0023720.1 Alkaloid GS low borderline
GhirD07G0026260.1 Alkaloid GS low borderline
GhirD07G0026280.1 Alkaloid GS low borderline
GhirD09G0003090.1 Alkaloid GS low borderline
GhirD09G0003090.2 Alkaloid GS low borderline
GhirD09G0003090.3 Alkaloid GS low borderline
GhirD09G0003090.4 Alkaloid GS low borderline
GhirD09G0004800.1 Alkaloid GS medium pass
GhirD10G0002430.1 Alkaloid GS low borderline
GhirD10G0012760.1 Alkaloid GS medium pass
GhirD10G0014370.1 Alkaloid GS low borderline
GhirD10G0014370.2 Alkaloid GS low borderline
GhirD11G0016350.1 Alkaloid GS low borderline
GhirD11G0022550.1 Alkaloid GS high pass
GhirD11G0023890.1 Alkaloid GS high pass
GhirD11G0023900.1 Alkaloid GS high pass
GhirD11G0033860.1 Alkaloid GS high pass
GhirD11G0035600.1 Alkaloid GS low borderline
GhirD12G0002460.1 Alkaloid GS high pass
GhirD12G0008480.1 Alkaloid GS high pass
GhirD12G0008490.1 Alkaloid GS high pass
GhirD12G0008490.2 Alkaloid GS high pass
GhirD12G0027680.1 Alkaloid GS high pass
GhirD12G0027680.2 Alkaloid GS high pass
GhirD12G0029650.1 Alkaloid GS medium pass
GhirD13G0001060.1 Alkaloid GS low borderline
GhirA01G0000340.1 Alkaloid H6H medium borderline
GhirA01G0000650.1 Alkaloid H6H medium borderline
GhirA01G0003810.1 Alkaloid H6H low borderline
GhirA01G0003810.2 Alkaloid H6H low borderline
GhirA01G0003810.3 Alkaloid H6H low borderline
GhirA01G0003820.1 Alkaloid H6H low borderline
GhirA01G0003840.1 Alkaloid H6H low borderline
GhirA01G0023560.1 Alkaloid H6H low borderline
GhirA02G0004330.2 Alkaloid H6H medium borderline
GhirA02G0004370.1 Alkaloid H6H low borderline
GhirA02G0004370.2 Alkaloid H6H low borderline
GhirA02G0004380.1 Alkaloid H6H medium borderline
GhirA02G0004390.2 Alkaloid H6H low borderline
GhirA02G0013410.1 Alkaloid H6H low borderline